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Table 4 Results from the haplotype analyses

From: Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14

Gene name #haplotypesa P-value % Varb
Versican (VCAN) 7 0.03 0.1
Matrix metallopeptidase 13 (MMP13) 5 0.04 0.02
Oncostatin M (OSM) 2 0.0012 6.0
Pyrroline-5-carboxylate reductase 1 (PYCR1) 6 0.03 0.07
Vimentin (VIM) 11 0.13 0.1
  1. ahaplotypes were constructed within genes based on SNPs in Table 2 and are presented with the number of haplotypes with a frequency > 2%
  2. bthe percentage of explained phenotypic variance