Genome-wide association study reveals a QTL and strong candidate genes for umbilical hernia in pigs on SSC14

BMC Genomics

Table 4 Results from the haplotype analyses

Gene name	#haplotypes^a	P-value	% Var^b
Versican (VCAN)	7	0.03	0.1
Matrix metallopeptidase 13 (MMP13)	5	0.04	0.02
Oncostatin M (OSM)	2	0.0012	6.0
Pyrroline-5-carboxylate reductase 1 (PYCR1)	6	0.03	0.07
Vimentin (VIM)	11	0.13	0.1

^ahaplotypes were constructed within genes based on SNPs in Table 2 and are presented with the number of haplotypes with a frequency > 2%
^bthe percentage of explained phenotypic variance

ISSN: 1471-2164