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Fig. 5 | BMC Genomics

Fig. 5

From: Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring

Fig. 5

The correlations among 11 metrics for a genome assembly assessment. This figure, which was plotted using the R package ‘corrplot’, represents the correlation matrix of the 11 metrics used for assessing poplar chloroplast genome assembly. The 11 metrics in the figure were ‘num’ (number of contigs), ‘totalSum’ (the total base of contigs), ‘mean’ (the mean length of contigs), ‘max’ (the max length of contigs), ‘CoverRatio’ (the ratio of reference chloroplast genome covered by the aligned contigs), N80, L80, N50, L50, N20 and L20. N80, L80, N50, L50, N20 and L20 are defined by QUAST

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BMC Genomics

ISSN: 1471-2164

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