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Table 1 The most common duplications in the whole dataset

From: Landscape of copy number variations in Bos taurus: individual – and inter-breed variability

BTA

begin

end

genomic location

overlapping with the DGVa

2

136,813,001

136,815,100

intergenic

 

4

28,200,301

28,203,500

intergenic

 

8

70,883,001

70,885,000

intron of the ENSBTAG00000031916 gene (RHOBTB2)

[12] (2)

8

74,685,001

74,687,800

intergenic

 

9

53,617,901

53,621,800

intergenic

 

18

50,944,801

50,948,100

intergenic

[25] (4), [12] (1), [16] (1)

21

2,128,101

2,130,400

non coding transcript exon of the ENSBTAG00000048121 gene (SNORD116)

 

21

59,331,801

59,334,500

coding sequence variant and intron of ENSBTAG00000003152 gene

[12] (1)

27

5,516,501

5,519,500

intron of the ENSBTAG00000033545 gene

[25] (5), [12] (1)

27

28,539,101

28,543,700

intergenic

[25] (2)

27

28,543,901

28,548,300

intergenic

[25] (2)

27

28,548,501

28,552,600

intergenic

[25] (3)

27

28,878,101

28,881,600

intergenic

 

28

1,893,701

1,895,100

transcript amplification in the ENSBTAG00000045518 gene (5S rRNA)

[25] (4)

X

36,208,701

36,209,700

intergenic

[25] (1)

X

36,260,901

36,262,400

intergenic

[25] (1)

X

36,673,801

36,676,800

intergenic

[25] (2)

X

64,480,501

64,481,800

intron of the ENSBTAG00000015670 gene (PAK3)

[25] (2), [12] (1)

X

64,504,801

64,512,100

intron of the ENSBTAG00000015670 gene (PAK3)

[12] (1)

X

138,259,801

138,320,600

intergenic

[25] (1)

  1. The list of the 20 most common duplications detected in this study. Genomic locations were determined by the VEP program. The last column shows the number of duplications found in other studies available under the DGVa database