Table 4 Candidate genes significantly associated with seven cottonseed traits

A5_22579901

Gh_A05G1876

CDS

Peptidase C48, SUMO/Sentrin/Ubl1 (IPR003653)

A7_1504479

Gh_A07G0108

CDS

Protein kinase domain (IPR000719);

Serine-threonine/tyrosine-protein kinase, catalytic domain (IPR001245);

Serine/threonine-protein kinase, active site (IPR008271);

Protein kinase-like domain superfamily (IPR011009);

Concanavalin A-like lectin/glucanase domain superfamily (IPR013320);

Protein kinase, ATP binding site (IPR017441);

Tyrosine-protein kinase, catalytic domain (IPR020635);

Unknown (IPR002290)

D1_616439

Gh_D01G0083

3’-UTR

Pseudouridine synthase, RsuA/RluB/C/D/E/F (IPR006145);

Pseudouridine synthase, catalytic domain superfamily (IPR020103)

A2_58832915

Gh_D02G0225

CDS

UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213)

D1_62433793

Gh_D01G2232

5’-UTR

Chlorophyll A-B binding protein, plant (IPR001344);

Chlorophyll A-B binding protein (IPR022796);

Chlorophyll a/b binding domain superfamily (IPR023329);

A3_100487624

Gh_A10G1894

CDS

SLC26A/SulP transporter (IPR001902);

STAS domain (IPR002645); SLC26A/SulP transporter domain (IPR011547);

Sulphate anion transporter, conserved site (IPR018045); Unknown (IPR030402)

A7_2266630

Gh_D07G0133

intron

Armadillo-like helical (IPR011989);

Uncharacterised domain NUC173 (IPR012978);

Armadillo-type fold (IPR016024);

D1_1087912

Gh_D01G0153

CDS

Pentatricopeptide repeat (IPR002885);

Tetratricopeptide-like helical domain superfamily (IPR011990);

DYW domain (IPR032867)

A12_120581335

Gh_A12G2387

CDS

NA

D5_66975738

Gh_A04G0196

CDS

Transcription factor GRAS (IPR005202)

A7_642514

Gh_A07G0057

CDS

Small GTPase superfamily (IPR001806);

Ran GTPase (IPR002041);

Small GTPase superfamily, Rho type (IPR003578);

Unknown (IPR003579);

Small GTP-binding protein domain (IPR005225);

Small GTPase superfamily, Ras type (IPR020849);

P-loop containing nucleoside triphosphate hydrolase (IPR027417)

A2_25310067

Gh_A02G0110

CDS

Calreticulin/calnexin (IPR001580);

Calreticulin/calnexin, P domain superfamily (IPR009033); Calreticulin (IPR009169);

Concanavalin A-like lectin/glucanase domain superfamily (IPR013320);

Calreticulin/calnexin, conserved site (IPR018124)

A4_17627308

Gh_A03G0465

intron

Transferase (IPR003480);

Chloramphenicol acetyltransferase-like domain superfamily (IPR023213);

A11_32647777

Gh_D13G1997

up1k

MCM domain (IPR001208);

DNA replication licensing factor Mcm (IPR008048);

Nucleic acid-binding, OB-fold (IPR012340); Mini-chromosome maintenance, conserved site (IPR018525);

P-loop containing nucleoside triphosphate hydrolase (IPR027417);

MCM N-terminal domain (IPR027925);

Mini-chromosome maintenance protein (IPR031327);

A13_33729709

Gh_Sca004725G01

intron

Transferase (IPR003480);

Chloramphenicol acetyltransferase-like domain superfamily (IPR023213);

D1_10742184

Gh_A06G1283

up1k

Homeobox domain (IPR001356);

START domain (IPR002913);

Homeobox-like domain superfamily (IPR009057);

START-like domain superfamily (IPR023393)