Characterization of Nicotiana tabacum genotypes possessing deletion mutations that affect potyvirus resistance and the production of trichome exudates

Table 2 Predicted VAM scaffolds sorted by a hybrid physical/genetic mapping order

Anchored Scaffolds	Scaffolds with markers	RBST ordered Scaffolds	Scaffold length	Marker ID	Map cM	Diff-gene	# of genes
Nitab4.5_0003331			322,448	–	–	–	15
	Nitab4.5_0007068		139,279	Nt1AC8849 Nt1AE0363	0 2.3	Y*	8
	Nitab4.5_0008902		97,203	Nt1AC4113	1.8	–	3
	Nitab4.5_0013033		33,607	Nt1AC7974	2	Y	2
	Nitab4.5_0008971		95,815	Nt1AD4189	2.3	Y	6
Nitab4.5_0001441	Nitab4.5_0001441	Nitab4.5_0001441	550,039	Nt1AE3136^a	4.6	Y*	15
		Nitab4.5_0003268	320,528	–	–	Y*	12
		Nitab4.5_0010227	72,084	–	–	Y	1
		Nitab4.5_0006402	160,683	–	–	Y	1
		Nitab4.5_0002210	421,245	–	–	Y	13
		Nitab4.5_0002814	355,923	–	–	Y	16
		Nitab4.5_0002507	388,355	–	–	Y*	13
		Nitab4.5_0002458	393,533	–	–	Y*	13
		Nitab4.5_0005928	177,860	–	–	–	2
		Nitab4.5_0004518	237,847	–	–	–	1
		Nitab4.5_0006329	163,221	–	–	–	1
		Nitab4.5_0001037	657,976	–	–	–	2
		Nitab4.5_0008217	112,516	–	–	–	1
	Nitab4.5_0003843	Nitab4.5_0003843	276,436	Nt1AC3736	20.4	–	6
Nitab4.5_0002177	Nitab4.5_0002177	Nitab4.5_0002177	424,490	Nt1AE7112^a	21.9	Y*	17
Nitab4.5_0003711	Nitab4.5_0003711	Nitab4.5_0003711	284,557	Nt1AD8309	22.7	Y	7
Nitab4.5_0001375	Nitab4.5_0001375		566,801	Nt1AE5740 Nt1AE8790	22.7 23.2	Y*	18
Nitab4.5_0001375	Nitab4.5_0003487		300,957	Nt1AA4543	32.3	Y*	11

^aMarkers did not have a perfect match to scaffold due to incomplete scaffold sequencing
Diff-gene: a Y indicates that at least one of our contigs displaying > 3-fold K326/TI 1406 expression change aligned to this scaffold; a Y* means a contig from Table 1 appears on the scaffold
# of genes: genes predicted by Edwards et al. [25] to be within this scaffold (annotations found in Additional file 2)

ISSN: 1471-2164