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Table 1 Summary of transcriptome sequencing data from leaves of M. halliana under three Fe deficiency timepoints

From: Transcriptional and physiological analyses of short-term Iron deficiency response in apple seedlings provide insight into the regulation involved in photosynthesis

Samples

Raw Reads

Clean Reads

Mapped Reads

Q20 (%)

GC content (%)

T1_rep1

38,249,468

37,405,176

26,445,784 (70.7%)

97.09

47.16

T1_rep2

37,637,288

36,841,980

25,785,714 (69.99%)

97.18

46.95

T2_rep1

46,148,652

44,139,498

31,987,790 (72.47%)

97.16

46.89

T2_rep2

36,774,908

35,150,068

25,248,424 (71.83%)

97.51

46.99

T3_rep1

42,471,554

40,785,670

29,900,697 (73.31%)

97.53

47.43

T3_rep2

34,886,520

33,339,474

24,275,046 (72.81%)

97.61

47.05

  1. Q20% is the proportion of the nucleotide quality value larger than 20; GC content is proportion of guanidine and cytosine nucleotides among the total nucleotides
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BMC Genomics

ISSN: 1471-2164

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