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Table 2 The expression analysis of ten sugarcane candidate PCR reference genes (CRG) based on the RPKM value from RNA-seq data

From: Identification and evaluation of PCR reference genes for host and pathogen in sugarcane-Sporisorium scitamineum interaction system

CRG YC05–179 ROC22 mean SD CV
CK-24 h J-24 h J-48 h J-120 h CK-24 h J-24 h J-48 h J-120 h
ACAD 37.82 37.89 34.78 37.11 37.01 34.56 35.16 36.61 36.37 1.35 3.70%
CK1δ 91.73 89.52 94.76 92.68 94.37 87.24 93.32 98.05 92.71 3.32 3.58%
OTU5 69.95 72.46 71.13 77.11 71.21 69.04 75.94 71.98 72.35 2.81 3.88%
OPR7 51.73 52.14 55.65 53.10 48.94 52.02 51.81 50.56 51.99 1.93 3.72%
PABp8 137.92 135.44 131.73 124.45 138.25 131.10 138.93 135.35 134.15 4.87 3.63%
SARMp1 31.50 32.97 31.20 32.83 32.69 31.46 31.33 30.79 31.85 0.85 2.65%
GAPDH 30.31 30.21 29.81 29.19 28.36 28.71 30.26 29.30 29.52 0.74 2.52%
eEF1A 2520.172 2233.869 2788.05 1980.246 2260.422 1920.52 2271.531 2100.286 2259.387 284.4435 12.59%
CUL 107.9021 105.826 101.8729 111.1481 117.8406 113.4682 118.8913 111.88 111.1037 5.800734 5.22%
CAC
  1. Note: YC05–179 and ROC22, sugarcane genotype YC05–179 and ROC22; CRG candidate PCR reference gene, RPKM reads per kilo bases per million reads, CK/J-24 h, −48 h and − 120 h the data from the control/treated (CK/J) sample for CK/J-24 h, 48 h, 120 h incubation (Que et al. 2014), SD standard deviation, CV covariation, The CAC gene was not found in the RNA-seq data