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Fig. 2 | BMC Genomics

Fig. 2

From: Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Fig. 2

Global analysis of RNAseq data. a Venn diagram showing the number of genes significantly induced (respectively repressed) in A22 or B57 cells (p < 0.01; Fold Change (FC > 2.5 or < 0.4) by inactivated VHSV: A22ind and B57ind (respectively A22rep and B57rep). Numbers of genes modulated in A22 only are in red, numbers of genes modulated only in B57 are in Blue, and numbers of genes modulated in both are in purple; numbers in categories empty by definition are in grey background. b LogFC/logFC representation. Average FC values are represented for genes significantly modulated (p < 0.01; Fold Change (FC > 2.5 or < 0.4) by inactivated VHSV. The FC of genes differentially expressed in only one cell line were represented on a line set up at an arbitrary level of 100 (induced genes) or 0.01 (repressed genes) on the axis of the other, for a clear representation of the data. The numbers of such genes are indicated in the figure. Genes with a homolog in the list considered by Schoggins et al. [29] were counted as ISG, as in Fig. 3

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