Fig. 6

Number of Pfam functional domains or aligned contigs for four QPX strains. Pfam is a public database that includes functional protein domains found in many species. Alignment between QPX contigs and Pfam domains is done with HMMER for each sequenced strain. Each color represents a strain. Each contrast for each color represents a different e-value. Virulence, temperature, salt tolerance, and salinity are the selected Pfam domains used for QPX annotation. On the left is the unique number of domains identified from the alignment. For example, if 2 different contigs are aligned to one Pfam domain 1 is added. On the right is the estimated number of QPX contigs with protein domains. For example if 2 different contigs are aligned to one Pfam domain 2 are added