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Table 2 Candidate genes identified from the coevol, branch-site, and protein abundance analyses

From: Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems

   

Coevol

Codeml

Protein abundance differences

CCDS

Transcript ID

Gene name

Mating type

(uni or multi)

Mean number of partners

Semen coagulation

Relative testis size

Sexual size dimorphism

Branch-site

Protein abundance

CCDS13927.1

ENST00000216181

MYH9

0.004

1.000

1.000

1.000

ns

x

ns

CCDS4932.1

ENST00000335847

CRISP1

0.001

1.000

0.990

1.000

ns

ns

ns

CCDS11192.1

ENST00000327031

FLII

0.016

0.990

ns

1.000

ns

ns

ns

CCDS11061.1

ENST00000225655

PFN1

0.025

0.990

ns

1.000

ns

ns

ns

CCDS2885.1

ENST00000295956

FLNB

0.010

0.990

0.980

0.990

ns

ns

ns

CCDS10869.1

ENST00000268794

CDH1

0.003

0.990

0.980

0.990

ns

ns

ns

CCDS4022.1

ENST00000261416

HEXB

0.007

1.000

ns

0.990

ns

ns

x

CCDS840.1

ENST00000369709

RAP1A

ns

ns

ns

0.980

ns

ns

ns

CCDS11788.1

ENST00000269321

ARHGDIA

ns

ns

ns

0.980

ns

ns

ns

CCDS31584.1

ENST00000378024

AHNAK

0.005

1.000

0.990

ns

ns

x

ns

CCDS8440.1

ENST00000227378

HSPA8

0.011

0.990

0.980

ns

ns

x

x

CCDS1585.1

ENST00000366667

AGT

ns

0.980

ns

ns

ns

ns

ns

CCDS32883.1

ENST00000245907

C3

ns

0.980

ns

ns

ns

ns

ns

CCDS34209.1

ENST00000261483

MAN2A1

0.980

0.025

0.025

ns

ns

ns

ns

CCDS8464.1

ENST00000305738

PATE

0.980

0.013

ns

ns

ns

ns

ns

CCDS3125.1

ENST00000337777

PLS1

0.980

0.018

ns

ns

ns

ns

ns

CCDS11400.1

ENST00000167586

KRT14

ns

 

ns

0.025

0.990

ns

ns

CCDS2762.1

ENST00000296435

CAMP

ns

0.020

ns

0.025

ns

ns

ns

CCDS31035.1

ENST00000366869

CAPN2

0.990

0.007

0.024

0.017

ns

ns

ns

CCDS7299.1

ENST00000373232

PPA1

ns

ns

ns

0.016

ns

ns

ns

CCDS12385.1

ENST00000222271

COMP

ns

ns

ns

0.015

ns

ns

ns

CCDS33524.1

ENST00000284984

ADAMTS1

0.980

0.015

ns

0.015

ns

ns

ns

CCDS34632.1

ENST00000381083

IGFBP3

0.990

0.013

ns

0.015

ns

ns

ns

CCDS9927.1

ENST00000298841

SERPINA4

1.000

0.000

0.005

0.013

ns

ns

ns

CCDS14330.1

ENST00000376064

AKAP4

0.980

0.015

0.018

0.012

ns

ns

ns

CCDS9456.1

ENST00000377453

CLN5

0.990

0.011

0.015

0.011

ns

ns

ns

CCDS10856.1

ENST00000268793

DPEP3

0.990

0.006

0.021

0.010

ns

ns

ns

CCDS42064.1

ENST00000220166

CTSH

0.990

0.009

ns

0.009

ns

ns

ns

CCDS1721.1

ENST00000380649

HADHA

1.000

0.002

0.009

0.008

ns

ns

ns

CCDS10356.1

ENST00000300060

ANPEP

ns

0.016

ns

0.007

ns

ns

ns

CCDS2991.1

ENST00000273371

PLA1A

0.990

0.007

ns

0.007

ns

ns

ns

CCDS42992.1

ENST00000248923

GGT1

0.990

0.011

ns

0.007

ns

ns

ns

CCDS6828.1

ENST00000373818

GSN

ns

0.017

ns

0.005

ns

ns

ns

CCDS10721.1

ENST00000299138

VPS35

ns

0.024

ns

0.000

ns

ns

ns

CCDS30861.1

ENST00000388718

FLG2

ns

ns

ns

ns

ns

x

ns

CCDS7472.1

ENST00000266066

SFRP5

ns

ns

ns

ns

ns

x

ns

CCDS42353.1

ENST00000333412

LRRC37A2

ns

ns

ns

ns

ns

x

ns

CCDS34640.1

ENST00000275603

CCT6A

ns

ns

ns

ns

ns

x

ns

CCDS14124.1

ENST00000217939

MXRA5

ns

ns

ns

ns

ns

x

ns

CCDS11257.1

ENST00000225719

CPD

ns

ns

ns

ns

ns

x

ns

CCDS3280.1

ENST00000232003

HRG

ns

ns

ns

ns

ns

x

ns

CCDS8103.1

ENST00000301873

LTBP3

ns

ns

ns

ns

ns

x

ns

CCDS34768.1

ENST00000291009

PIP

ns

ns

ns

ns

ns

x

ns

CCDS33564.1

ENST00000332149

TMPRSS2

ns

ns

ns

ns

ns

x

ns

CCDS93.1

ENST00000377493

PARK7

ns

ns

ns

ns

ns

x

ns

CCDS10659.1

ENST00000308713

SEZ6L2

ns

ns

ns

ns

ns

x

ns

CCDS11791.1

ENST00000331285

PCYT2

ns

ns

ns

ns

ns

x

ns

CCDS43896.1

ENST00000372080

CEL

ns

ns

ns

ns

ns

x

ns

CCDS13245.1

ENST00000216951

GSS

ns

ns

ns

ns

ns

x

ns

CCDS2976.1

ENST00000273398

ATP6V1A

ns

ns

ns

ns

ns

x

ns

CCDS3421.1

ENST00000281243

QDPR

ns

ns

ns

ns

ns

x

ns

CCDS6545.1

ENST00000379405

PRSS3

ns

ns

ns

ns

ns

x

ns

CCDS9557.1

ENST00000326783

FAM12B

ns

ns

ns

ns

ns

x

ns

CCDS3508.1

ENST00000248701

SPINK2

ns

ns

ns

ns

ns

x

ns

CCDS11328.1

ENST00000225426

PSMB3

ns

ns

ns

ns

ns

ns

x

CCDS1874.1

ENST00000233114

MDH1

ns

ns

ns

ns

ns

ns

x

 

ENST00000238081

YWHAQ

ns

ns

ns

ns

ns

ns

x

CCDS12620.1

ENST00000244333

LYPD3

ns

ns

ns

ns

ns

ns

x

CCDS 8984.1

ENST00000250559

RAP1B

ns

ns

ns

ns

ns

ns

x

CCDS8836.1

ENST00000252244

KRT1

ns

ns

ns

ns

ns

ns

x

CCDS3810.1

ENST00000261510

CPE

ns

ns

ns

ns

ns

ns

x

CCDS7763.1

ENST00000265983

HPX

ns

ns

ns

ns

ns

ns

x

CCDS11377.1

ENST00000269576

KRT10

ns

ns

ns

ns

ns

ns

x

CCDS9168.1

ENST00000280800

P76

ns

ns

ns

ns

ns

ns

x

CCDS5831.1

ENST00000285930

AKR1B1

ns

ns

ns

ns

ns

ns

x

CCDS10755.1

ENST00000290567

CES5A

ns

ns

ns

ns

ns

ns

x

CCDS5680.1

ENST00000292401

AZGP1

ns

ns

ns

ns

ns

ns

x

CCDS2723.1

ENST00000296125

TGM4

ns

ns

ns

ns

ns

ns

x

CCDS3720.1

ENST00000296511

ANXA5

ns

ns

ns

ns

ns

ns

x

CCDS32808.1

ENST00000308268

PSMA8

ns

ns

ns

ns

ns

ns

x

CCDS6675.1

ENST00000343150

CTSL1

ns

ns

ns

ns

ns

ns

x

CCDS2381.1

ENST00000345146

IDH1

ns

ns

ns

ns

ns

ns

x

CCDS1474.1

ENST00000356495

PIGR

ns

ns

ns

ns

ns

ns

x

CCDS6573

ENST00000358901

VCP

ns

ns

ns

ns

ns

ns

x

CCDS3172

ENST00000360490

MME

ns

ns

ns

ns

ns

ns

x

CCDS30950.1

ENST00000367602

QSOX1

ns

ns

ns

ns

ns

ns

x

CCDS6892.1

ENST00000372998

LCN2

ns

ns

ns

ns

ns

ns

x

 

ENST00000380131

 

ns

ns

ns

ns

ns

ns

x

 

ENST00000380904

ALB

ns

ns

ns

ns

ns

ns

x

CCDS6005.1

ENST00000381733

ASAH1

ns

ns

ns

ns

ns

ns

x

CCDS2628.1

ENST00000383778

BTD

ns

ns

ns

ns

ns

ns

x

 

ENST00000403558

SERPING1

ns

ns

ns

ns

ns

ns

x

 

ENST00000421235

 

ns

ns

ns

ns

ns

ns

x

 

ENST00000428859

RNASET2

ns

ns

ns

ns

ns

ns

x

  1. High confidence positive and negative posterior probabilities for sexual characters included in the coevol analyses are shown in the coevol fields. Genes with a significant branch-site test or protein abundance differences between uni- and multi-male mating systems are indicated with an ‘x’. Non-significant values are marked with ‘ns’