Fig. 5
From: Genome-wide epigenetic variation among ash trees differing in susceptibility to a fungal disease
Differential methylation in homeologs of sample F.exc 33–2 (as an example), split into CG, CHG and CHH contexts, plotted as methylation of one paralog in a pair against methylation of the other. Q-values shown are FDR-adjusted p-values, to correct for multiple tests. Low q-values tend to occur in top-left and bottom-right corners of the graphs (where one paralog has low methylation and the other high) and along each zero axes; where one paralog has zero methylation and the other has at least a medium level