Table 3 Percentage of homeolog pairs (with at least ten cytosines covered by > 3 reads) that are significantly differentially methylated for each F. excelsior tree
From: Genome-wide epigenetic variation among ash trees differing in susceptibility to a fungal disease
Sample | Significantly differentially methylated gene WGD pairs out of total with sufficient coverage | ||
|---|---|---|---|
CG | CHG | CHH | |
F. exc 27–1 | 128 / 553 (23%) | 314 / 1045 (30%) | 516 / 2281 (23%) |
F. exc 27–2 | 186 / 700 (27%) | 377 / 1263 (30%) | 624 / 2422 (26%) |
F. exc 33–1 | 131 / 475 (28%) | 251 / 893 (28%) | 472 / 2163(22%) |
F. exc 33–2 | 465 / 1690 (28%) | 622 / 2214 (28%) | 808 / 2992 (27%) |
F. exc 33–3 | 304 / 1189 (26%) | 485 / 1823 (27%) | 768 / 2836 (27%) |
F. exc 33–4 | 300 / 1094 (27%) | 437 / 1688 (26%) | 694 / 2726 (26%) |
F. exc 33–5 | 50 / 177 (28%) | 139 / 410 (34%) | 371 / 1577 (24%) |
F. exc 35–1 | 212 / 846 (25%) | 403 / 1472 (27%) | 655 / 2599 (25%) |
F. exc 35–2 | 296 / 1095 (27%) | 462 / 1689 (27%) | 738 / 2722 (27%) |
F. exc 35–3 | 256 / 1006 (25%) | 430 / 1650 (26%) | 654 / 2687 (24%) |
F. exc 35–4 | 110 / 488 (23%) | 259 / 933 (28%) | 536 / 2240 (24%) |
F. exc 35–5 | 15 / 75 (20%) | 71 / 175 (41%) | 210 / 930 (23%) |
F. exc 40–1 | 7 / 37 (19%) | 28 / 89 (32%) | 133 / 672 (20%) |
F. exc 40–2 | 279 / 1070 (26%) | 486 / 1709 (18%) | 719 / 2745 (26%) |
F. exc 40–3 | 254 / 1032 (25%) | 447 / 1671 (27%) | 629 / 2747 (23%) |
F. exc 40–4 | 250 / 1028 (24%) | 444 / 1622 (27%) | 647 / 2699 (24%) |
F. exc 40–5 | 175 / 666 (26%) | 367 / 1203 (31%) | 648 / 2440 (27%) |