A high-density genetic map of extra-long staple cotton (Gossypium barbadense) constructed using genotyping-by-sequencing based single nucleotide polymorphic markers and identification of fiber traits-related QTL in a recombinant inbred line population

Table 6 The results of comparision between linkage groups and reference genome of G.hirstumn TM-1

#LG	Snp_num	Blast_Snp_num	Chr	Blast_chr_num	Blast_chr_ratio
LG2	550	408	A1	408	100.00
LG3	56	44	D05	44	100.00
LG4	126	105	D08	105	100.00
LG5	58	49	A02	49	100.00
LG8	119	19	A08	19	100.00
LG9	42	27	A6	27	100.00
LG11	117	97	A13	97	100.00
LG12	479	458	A1	458	100.00
LG13	51	38	A1	38	100.00
LG14	279	240	A10	240	100.00
LG15	129	120	A6	120	100.00
LG16	39	31	D11	31	100.00
LG17	45	34	A02	34	100.00
LG18	50	28	D13	28	100.00
LG19	38	30	D6	30	100.00
LG21	131	65	D03	65	100.00
LG23	29	13	D08	13	100.00
LG24	42	29	A07	29	100.00
LG25	68	43	A10	43	100.00
LG26	34	22	D02	22	100.00
LG10	372	327	A03	326	99.69
LG7	287	269	A08	268	99.63
LG20	88	70	A12	69	98.57
LG22	85	75	D11	67	89.33
LG6	50	38	D08	25	65.79
LG1	193	142	D07	85	59.86

ISSN: 1471-2164