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Table 3 The KEGG pathway analysis (with P < 0.05) based on the cis- and trans-regulated differentially expressed targets of differentially expressed lncRNAs

From: Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Pathway Id pathway description S gene number TS gene number B gene number TB gene number P value
ko00190 Oxidative phosphorylation 74 531 76 689 0.000
ko04514 Cell adhesion molecules (CAMs) 34 531 35 689 0.001
ko00280 Valine, leucine and isoleucine degradation 32 531 33 689 0.002
ko00240 Pyrimidine metabolism 38 531 40 689 0.002
ko00620 Pyruvate metabolism 30 531 31 689 0.003
ko04260 Cardiac muscle contraction 22 531 22 689 0.003
ko05168 Herpes simplex infection 42 531 45 689 0.003
ko04210 Apoptosis 40 531 43 689 0.005
ko00270 Cysteine and methionine metabolism 20 531 20 689 0.005
ko00020 Citrate cycle (TCA cycle 20 531 20 689 0.005
ko01200 Carbon metabolism 60 531 67 689 0.005
ko01230 Biosynthesis of amino acids 38 531 41 689 0.007
ko04672 Intestinal immune network for IgA production 18 531 18 689 0.009
ko03010 Ribosome 56 531 63 689 0.011
ko00640 Propanoate metabolism 24 531 25 689 0.011
ko00230 Purine metabolism 45 531 50 689 0.014
ko00970 Aminoacyl-tRNA biosynthesis 16 531 16 689 0.015
ko03320 PPAR signaling pathway 34 531 37 689 0.016
ko04217 Necroptosis 28 531 30 689 0.018
ko01212 Fatty acid metabolism 22 531 23 689 0.018
ko00630 Glyoxylate and dicarboxylate metabolism 22 531 23 689 0.018
ko05164 Influenza A 38 531 42 689 0.020
ko00480 Glutathione metabolism 20 531 21 689 0.029
ko04216 Ferroptosis 12 531 12 689 0.043
ko00983 Drug metabolism - other enzymes 12 531 12 689 0.043
  1. S gene number: the number of significant differentially expressed lncRNAs whose cis-or trans- regulated targets match to a KEGG term; TS gene number: the number of significant differentially expressed lncRNAs whose cis- or trans- regulated targets have KEGG annotations; B gene number: the number of detected lncRNAs whose cis- or trans- regulated targets match to a KEGG term; TB gene number: the number of all detected lncRNAs whose cis- or trans- regulated targets have KEGG annotations