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Table 3 The KEGG pathway analysis (with P < 0.05) based on the cis- and trans-regulated differentially expressed targets of differentially expressed lncRNAs

From: Identification and characterization of long noncoding RNAs and mRNAs expression profiles related to postnatal liver maturation of breeder roosters using Ribo-zero RNA sequencing

Pathway Id

pathway description

S gene number

TS gene number

B gene number

TB gene number

P value

ko00190

Oxidative phosphorylation

74

531

76

689

0.000

ko04514

Cell adhesion molecules (CAMs)

34

531

35

689

0.001

ko00280

Valine, leucine and isoleucine degradation

32

531

33

689

0.002

ko00240

Pyrimidine metabolism

38

531

40

689

0.002

ko00620

Pyruvate metabolism

30

531

31

689

0.003

ko04260

Cardiac muscle contraction

22

531

22

689

0.003

ko05168

Herpes simplex infection

42

531

45

689

0.003

ko04210

Apoptosis

40

531

43

689

0.005

ko00270

Cysteine and methionine metabolism

20

531

20

689

0.005

ko00020

Citrate cycle (TCA cycle

20

531

20

689

0.005

ko01200

Carbon metabolism

60

531

67

689

0.005

ko01230

Biosynthesis of amino acids

38

531

41

689

0.007

ko04672

Intestinal immune network for IgA production

18

531

18

689

0.009

ko03010

Ribosome

56

531

63

689

0.011

ko00640

Propanoate metabolism

24

531

25

689

0.011

ko00230

Purine metabolism

45

531

50

689

0.014

ko00970

Aminoacyl-tRNA biosynthesis

16

531

16

689

0.015

ko03320

PPAR signaling pathway

34

531

37

689

0.016

ko04217

Necroptosis

28

531

30

689

0.018

ko01212

Fatty acid metabolism

22

531

23

689

0.018

ko00630

Glyoxylate and dicarboxylate metabolism

22

531

23

689

0.018

ko05164

Influenza A

38

531

42

689

0.020

ko00480

Glutathione metabolism

20

531

21

689

0.029

ko04216

Ferroptosis

12

531

12

689

0.043

ko00983

Drug metabolism - other enzymes

12

531

12

689

0.043

  1. S gene number: the number of significant differentially expressed lncRNAs whose cis-or trans- regulated targets match to a KEGG term; TS gene number: the number of significant differentially expressed lncRNAs whose cis- or trans- regulated targets have KEGG annotations; B gene number: the number of detected lncRNAs whose cis- or trans- regulated targets match to a KEGG term; TB gene number: the number of all detected lncRNAs whose cis- or trans- regulated targets have KEGG annotations