The first next-generation sequencing approach to the mitochondrial phylogeny of African monogenean parasites (Platyhelminthes: Gyrodactylidae and Dactylogyridae)

Vanhove, Maarten P. M.; Briscoe, Andrew G.; Jorissen, Michiel W. P.; Littlewood, D. Tim J.; Huyse, Tine

doi:10.1186/s12864-018-4893-5

Table 2 Overview of the length of markers, the start and stop codons (protein-coding genes) and anticodons (tRNA genes) for the four assembled mitochondrial genomes

From: The first next-generation sequencing approach to the mitochondrial phylogeny of African monogenean parasites (Platyhelminthes: Gyrodactylidae and Dactylogyridae)

	Gyrodactylus nyanzae				Macrogyrodactylus karibae			Cichlidogyrus halli				Cichlidogyrus mbirizei
	Position	Length	Start/stop codon	Anticodon	Length	Start/stop codon	Anticodon	Position	Length	Start/stop codon	Anticodon	Length	Start/stop codon	Anticodon
cox3	1-639	639	ATG/TAA		639	ATG/TAA		13-658	646	ATG/T		646	ATG/T
trnH	642-709	68		GTG	63		GTG	659-722	64		GTG	63		GTG
cytb	713-1789	1077	ATG/TAA		1080	ATG/TAG		723-1799	1077	ATG/TAA		1077	ATG/TAG
nad4L	1792-2049	258	ATG/TAA		171 (partial)	ATG/-		1803-2063	261	GTG/TAG		261	GTG/TAG
nad4	2022-3221	1200	ATG/TAA		–	–		2036-3250	1215	ATG/TAG		1212	ATG/TAG
trnQ	3237-3299	63		TTG	–		–	3256-3317	62		TTG	62		TTG
trnM	3298-3364	67		CAT	–		–	3374-3438	65		CAT	63		CAT
trnF	3437-3504	68		GAA	–		–	3318-3381	64		GAA	64		GAA
AT-rich segment	3505-4268	764			–			–	–			–
atp6	4269-4781	513	ATG/TAA		513	ATG/TAG		3443-3952	510	ATG/TAG		510	ATG/TAG
nad2	4788-5663	876	ATG/TAA		876	ATG/TAA		3960-4792	833	ATG/TA		833	GTG/TA
trnV	5676-5741	66		TAC	63		TAC	4793-4855	63		TAC	64		TAC
trnA	5754-5823	70		TGC	64		TGC	4866-4934	69		TGC	68		TGC
AT-rich region	–	–	–	–	–	–	–	4958-5022	65
trnD	5834-5899	66		GTC	65		GTC	5075-5136	62		GTC	64		GTC
nad1	5904-6791	888	GTG/TAA		888	GTG/TAA		5137-6024	888	GTG/TAG		888	GTG/TAG
trnN	6796-6867	72		GTT	68		GTT	6027-6092	66		GTT	68		GTT
trnP	6868-6939	72		TGG	64		TGG	6098-6162	65		TGG	64		TGG
trnI	6938-7002	65		GAT	64		GAT	6162-6228	67		GAT	67		GAT
trnK	7007-7073	67		CTT	62		CTT	6230-6292	63		CTT	64		CTT
nad3	7078-7428	351	ATG/TAA		351	ATG/TAA		6294-6641	348	GTG/TAA		348	GTG/TAG
trnS1	7441-7498	58		GCT	59		GCT	6648-6712	65		GCT	58		GCT
trnW	7506-7570	65		TCA	65		TCA	6710-6769	60		TCA	63		TCA
cox1	7575-9122	1548	ATG/TAA		1548	ATG/TAG		6773-8356	1584	ATG/TAG		1581	ATG/TAA
trnT	9132-9199	68		TGT	63		TGT	8369-8433	65		TGT	63		TGT
16S rRNA	9200-10,170	971			959			8434-9373	940			939
trnC	10,172-10,237	66		GCA	60		GCA	9374-9436	63		GCA	61		GCA
12S rRNA	10,239-10,948	710			706			9437-10,166	730			722
AT-rich segment/repeat region	–	–	–	–	–	–	–	10,167-10,743	577			320
cox2	10,963-11,538	576	TTG/TAA		579	TTG/TAA		10,744-11,316	573	ATG/TAA		576	ATG/TAA
trnE	11,622-11,689	68		TTC	68		TTC	11,321-11,386	66		TTC	61		TTC
repeat region	11,694-12,296	603			–	–	–	–	–			320
nad6	12,391-12,867	477	ATG/TAA		477	ATG/TAG		11,390-11,881	492	TTG/TAA		447	ATG/TAA
trnY	12,869-12,934	66		GTA	64		GTA	11,883-11,947	65		GTA	63		GTA
trnL1	12,951-13,021	71		TAG	66		TAG	11,951-12,018	68		TAG	63		TAG
trnS2	13,035-13,093	59		TGA	58		TGA	12,019-12,083	65		TGA	–		–
trnL2	13,097-13,163	67		TAA	68		TAA	12,084-12,148	65		TAA	–		–
trnR	13,176-13,246	71		TCG	64		TCG	12,150-12,212	63		TCG	–		–
nad5	13,250-14,806	1557	ATG/TAG		1566	ATG/TAG		12,214-13,758	1545	ATG/TAG		–	–
repeat region					174			13,911-14,302	392			–
repeat region					167			14,372-14,915	544			–
trnG	14,812-14,880	69		TCC	64		TCC	14,931-14,996	66		TCC	64		TCC

Positions on the genome are only indicated for complete mitogenomes

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ISSN: 1471-2164

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