Table 2 Overview of quality of the RNAseq reads and the number of reads aligning to the human and the A. fumigatus and A. niger genomes
Total read number | Read number after cleaning | % reads aligned to A549 | % reads aligned to A. fumigatus | % reads aligned to A. niger | |
|---|---|---|---|---|---|
A549 | 2.41*107 | 2.41*107 | 95.35 | ||
A. fumigatus | 1.32*107 | 1.32*107 | 96.1 | ||
A. niger | 3. 19*107 | 3. 19*107 | 95.65 | ||
A549 + A. fumigatus | 1.93*108 | 5.26*107 | 94.8 | 0.6 | |
A549 + A. niger | 1.98*108 | 5.29*107 | 94.75 | 0.65 |