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Table 1 Summary of experiments, data and analyses

From: Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

Tissue splicing Breed splicing sQTLs Experiment Tissue type Sample No. Breed Individual No.
   I 18 variousa 54 Holstein 1
   II Milk cells & mammary 12 Holstein 6
  III White blood cells 105 Holstein 105b
III Milk cells 131 Holstein & Jersey 105b & 26
  IV Liver 35 Angus 35
  IV Muscle 41 Angus 41
  1. Tissue splicing: variation in differential splicing associated with tissue types estimated using RNA sequence data from all experiments. Breed splicing: variation in differential splicing associated with Holstein and Jersey breeds estimated using RNA sequence data of milk cells from experiment III. sQTLs: cis splicing quantitative trait loci, sQTLs estimated using RNA sequence data and imputed whole genome and from experiment III and IV. Data from experiment III and IV were also used to estimate exon expression eeQTLs and gene expression geQTLs
  2. a18 tissues from [41]. b The same 105 Holstein cattle, each of which had both white blood and milk cell transcriptomic data