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Table 3 The overlap between the multi-transcriptome meta-analysis of three tissues and the single transcriptome results of liver

From: Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues

sQTLs

Meta-analysis

Overlap p

+

–

p < 2e-16

Liver

+

768,650

2,842,552

–

139,551

4,301,536

eeQTLs

Meta-analysis

Overlap p

+

–

p < 2e-16

Liver

+

1,052,041

3,186,839

–

140,033

3,575,617

geQTLs

Meta-analysis

Overlap p

+

–

p < 2e-16

Liver

+

178,093

473,232

–

43,578

6,663,855

  1. sQTLs splicing quantitative trait loci, eeQTLs exon expression QTLs, geQTLs gene expression QTLs. Liver: QTLs with single-transcriptome effects p < 0.05 in the liver. Meta-analysis: QTLs with χ2 p < 1e-05 for the meta-analysis of white blood cells, milk cells and muscle. ‘+’ indicates the number of SNPs met the significance criteria while ‘–’ indicates number of SNPs failed to meet the significance criteria
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BMC Genomics

ISSN: 1471-2164

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