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Table 4 Polyketide synthase backbone genes in Mn4

From: Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

Gene ID Secondary Metabolite type Domain arrangementa Counts FPKM
Mn4_07902 PKS AT-AT-AT-KS-PP 1411.17 15.05
Mn4_10535 PKS KS-AT-PP-PP-PP-PP-PP-PP-PP-KR-DH 613.52 10.10
Mn4_10926 PKS AT-KS-PP 13,515.00 308.75
Mn4_04057 PKS-like PP-KS-DH-KR-PP:KS-KR-PP-KS-DH-KR-PP:KS-MT-KR-PP-TE 465.00 3.52
Mn4_13634 PKS-like KS-KS-AT-AT 348.67 8.01
Mn4_03582 KS-only KS 169.00 17.70
Mn4_00666 trans-AT AT-AT 1568.00 100.42
Mn4_01567 trans-AT AT-AT 446.67 21.99
Mn4_01870 trans-AT AT 265.00 25.17
Mn4_01972 trans-AT AT 63.34 7.31
Mn4_04434 trans-AT AT-AT 576.33 17.42
Mn4_07257 trans-AT AT-AT 536.17 43.96
Mn4_08818 trans-AT AT 9.33 0.97
Mn4_10925 trans-AT AT 37.34 5.51
Mn4_11592 trans-AT AT 1699.17 79.82
Mn4_14122 trans-AT AT 70.34 3.63
  1. aThe colon means there is an overlapping between two domains. (AT Acyl transferase, DH Dehydratase, KR Keto reductase, KS Beta-ketoacyl synthase, MT Methyltransferase, PP Phosphopantetheine, TE Thioesterase)