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Table 4 Polyketide synthase backbone genes in Mn4

From: Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

Gene ID

Secondary Metabolite type

Domain arrangementa

Counts

FPKM

Mn4_07902

PKS

AT-AT-AT-KS-PP

1411.17

15.05

Mn4_10535

PKS

KS-AT-PP-PP-PP-PP-PP-PP-PP-KR-DH

613.52

10.10

Mn4_10926

PKS

AT-KS-PP

13,515.00

308.75

Mn4_04057

PKS-like

PP-KS-DH-KR-PP:KS-KR-PP-KS-DH-KR-PP:KS-MT-KR-PP-TE

465.00

3.52

Mn4_13634

PKS-like

KS-KS-AT-AT

348.67

8.01

Mn4_03582

KS-only

KS

169.00

17.70

Mn4_00666

trans-AT

AT-AT

1568.00

100.42

Mn4_01567

trans-AT

AT-AT

446.67

21.99

Mn4_01870

trans-AT

AT

265.00

25.17

Mn4_01972

trans-AT

AT

63.34

7.31

Mn4_04434

trans-AT

AT-AT

576.33

17.42

Mn4_07257

trans-AT

AT-AT

536.17

43.96

Mn4_08818

trans-AT

AT

9.33

0.97

Mn4_10925

trans-AT

AT

37.34

5.51

Mn4_11592

trans-AT

AT

1699.17

79.82

Mn4_14122

trans-AT

AT

70.34

3.63

  1. aThe colon means there is an overlapping between two domains. (AT Acyl transferase, DH Dehydratase, KR Keto reductase, KS Beta-ketoacyl synthase, MT Methyltransferase, PP Phosphopantetheine, TE Thioesterase)