Table 2 Inverse miRNA Targets
Transcript | Annotation | miRNA | Cleavage Site | psRNATa EXP | UPE | TFb Score | C1c Abun | E1d Abun | C2e Abun | E2f Abun | PARE LogFC1 | PARE LogFC2 | RNAseq LogFC | RNAseq PValue | Stress |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bradi1g11800.5 | NF-YA | miR169a-5p | 1447 | 4.5 | 16.524 | 4 | 95 | 53 | 82 | 34 | −0.842 | −1.270 | 0.822 | 2.15E-04 | Cold |
Bradi2g35720.1 | TIR1 | miR393ab | 1787 | 3 | 17.544 | 1 | 52 | 21 | 52 | 7 | −1.308 | −2.893 | 0.484 | 2.76E-02 | Cold |
Bradi2g59200.1 | LCR | miR394 | 1479 | 0 | 20.387 | 0 | 196 | 47 | 134 | 33 | −2.060 | −2.022 | 0.463 | 3.19E-02 | Cold |
Bradi2g28153.1 | Unknown | miR5177 | 1267 | 5 | 20.308 | none | 15 | 2 | 3 | 2 | −2.907 | −0.585 | 0.838 | 2.97E-04 | Drought |
Bradi2g38552.2 | Unknown | miR390a-5p | 767 | 4 | 7.202 | none | 36 | 11 | 42 | 13 | −1.710 | − 1.692 | 0.693 | 3.59E-02 | Drought |
Bradi3g52547.1 | GRF | miR396ab | 592 | 1 | 21.583 | 1 | 1085 | 303 | 1407 | 443 | −1.840 | −1.667 | 0.983 | 1.87E-04 | Drought |
Bradi2g35720.1 | TIR1 | miR393ab | 1787 | 3 | 17.544 | 1 | 52 | 30 | 52 | 26 | −0.794 | −1.000 | 1.180 | 2.55E-07 | Submergence |
Bradi3g05510.1 | SPL11 | miR156a | 857 | 2 | 20.607 | 2 | 107 | 56 | 58 | 29 | −0.934 | −1.000 | 0.559 | 2.18E-02 | Submergence |
Bradi3g50930.3 | GRAS | miR171a | 1475 | none | none | 0 | 51 | 86 | 43 | 70 | 0.754 | 0.703 | −0.750 | 9.11E-04 | Submergence |
Bradi5g08680.1 | F-box | miR393ab | 2183 | 3 | 23.264 | 1 | 15 | 5 | 20 | 9 | −1.585 | −1.152 | 0.451 | 4.81E-02 | Submergence |