Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis

BMC Genomics

Table 2 Studies included in group 1 (neurological tissues)

ID	Databank ID	Mice line	Tissue	Sampling time	Platform	Selected samples	Citation
H1	GSE77192	C57Bl/6	Cerebellum	6 dai	Agilent	2 × 5 (out of 60)	n.a.
H2	GSE77193	C57Bl/6	Cortex	6 dai	Agilent	2 × 5 (out of 60)	n.a.
HH	E-MTAB-5832	C57Bl/6	Cerebellum	5 dai	Affymetrix	2 × 6 (out of 29)	Lim et al. (2017)
PC	GSE53784	SW	Brain	5 to 6 dai	Affymetrix	2 × 3 (out of 12)	Clarke et al. (2014)
YV	GSE72139	C57Bl/6	Hippocampus	25 dai	Illumina	4 + 2 (out of 12)	Vasek et al. (2016)

The second column gives the databank ID from either GEO or ArrayExpress. The last column provides the number of samples selected from each study. Not each sample of a study qualified to be included into the meta-analysis. The first four studies had balances sizes of infected and control samples, study five had 4 samples in the infection group and 2 in the control group. For the last three studies, publications are available. Abbreviations: dai = days after infection; SW = Swiss Webster

ISSN: 1471-2164