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Table 2 SNP segregation in seven allele frequency groups (AFG) and expected, observed frequency of Julius alleles

From: Adaptive selection of founder segments and epistatic control of plant height in the MAGIC winter wheat population WM-800

Allele frequency group

No of founders carrying the Julius allele

Unique SNPs (%)

Observed Julius allele frequency (%)

Expected Julius allele frequency (%)

Unique SNPs (%)

 AFG 1 - Unique Julius

1

260

3.4

13.5

12.5

 AFG 2

2

531

 

25.9

25.0

 AFG 3

3

877

 

37.2

37.5

 AFG 4

4

842

 

48.5

50.0

 AFG 5

5

1315

 

62.2

62.5

 AFG 6

6

1582

 

75.7

75.0

 AFG 7

7

2177

 

87.1

87.5

AFG 7 subgroups

 AFG 7 - Unique Patras

 

368

4.9

  

 AFG 7 - Unique Meister

 

200

2.6

  

 AFG 7 - Unique Linus

 

382

5.0

  

 AFG 7 - Unique JB Asano

 

233

3.1

  

 AFG 7 - Unique Tobak

 

265

3.5

  

 AFG 7 - Unique Bernstein

 

329

4.3

  

 AFG 7 - Unique Safari

 

400

5.3

  

Sum of unique SNPs = AFG 1 + AFG7

 

2437

32.1

  

Total number of SNPs

 

7584

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