Fig. 2
From: An improved approach for reconstructing consensus repeats from short sequence reads
Illustration of two example repeats that are not fully constructed by the original REPdenovo. Highly frequent 30-mers of one human individual NA19230 are aligned to the human consensus repeats in Repbase. The left part (a) shows the alignments on repeat “LTR2B”. Two gaps are formed when 30-mers originated from highly divergent regions have low frequencies due to repeat copy divergence. The right part (b) shows the alignments on repeat “LTR10C”. The colored bars are variations on copies. The assembled contigs are fragmented because the 30-mers are of highly divergence