From: An improved approach for reconstructing consensus repeats from short sequence reads
Species | Methods | N | N h | N 0 | C avg | C m |
---|---|---|---|---|---|---|
REPdenovo* | 6192 | 108 | 332 | 0.61 | 0.49 | |
REPdenovo | 4648 | 89 | 220 | 0.66 | 0.55 | |
Human | RepARK | 2046 | 1 | 168 | 0.34 | 0.21 |
REPdenovo* | 808 | 24 | 102 | 0.42 | 0.31 | |
REPdenovo | 508 | 11 | 68 | 0.46 | 0.34 | |
Arabidopsis | RepARK | 632 | 8 | 59 | 0.33 | 0.21 |
REPdenovo* | 3644 | 69 | 177 | 0.83 | 0.61 | |
REPdenovo | 3031 | 33 | 133 | 0.67 | 0.49 | |
Drosophila | RepARK | 2,787 | 26 | 133 | 0.66 | 0.44 |