Table 1 Average ranks based on micro-accuracy
From: Single cell RNA-seq data clustering using TF-IDF based methods
Methods | M Nc | R N | M N | R Nc | B Nk | B Mc | 7-class | Pancreas | Avg. |
|---|---|---|---|---|---|---|---|---|---|
Seurat | 14.6 | 19.0 | 25.0 | 25.6 | 1.0 | 25.6 | 28.0 | 4.0 | 17.9 |
Seurat_SNN | 6.8 | 13.8 | 21.0 | 18.4 | 1.0 | 25.6 | 26.6 | 1.0 | 14.3 |
tSNE_Kmeans | 26.0 | 27.0 | 14.6 | 18.6 | 22.6 | 27.8 | 11.4 | 19.5 | 20.9 |
tSNE_HC_E | 25.0 | 25.4 | 12.6 | 18.0 | 6.0 | 11.2 | 10.0 | 20.0 | 16.0 |
Log_PCA_GMM | 20.8 | 10.6 | 2.4 | 12.8 | 1.0 | 1.0 | 4.4 | 14.5 | 8.4 |
Log_PCA_Kmeans | 24.4 | 24.4 | 26.4 | 26.8 | 1.0 | 1.0 | 7.6 | 14.0 | 15.7 |
Log_PCA_HC_E | 23.8 | 22.8 | 22.6 | 23.8 | 1.0 | 1.0 | 4.6 | 14.0 | 14.2 |
Log_PCA_HC_P | 27.0 | 25.2 | 25.4 | 26.0 | 16.4 | 6.0 | 2.4 | 18.5 | 18.4 |
Log_Louvain_E | 26.2 | 27.2 | 25.8 | 21.0 | 15.4 | 6.2 | 10.4 | 14.0 | 18.3 |
TF-IDF_Top_Kmeans | 6.0 | 16.8 | 15.8 | 17.0 | 1.0 | 1.0 | 9.2 | 21.0 | 11.0 |
TF-IDF_Top_sKmeans | 2.0 | 7.4 | 7.0 | 2.4 | 1.0 | 1.0 | 8.4 | 9.5 | 4.8 |
TF-IDF_Top_HC_E | 20.4 | 21.0 | 24.4 | 23.4 | 1.0 | 1.0 | 19.8 | 18.5 | 16.2 |
TF-IDF_Top_HC_P | 14.8 | 15.8 | 19.2 | 16.0 | 1.0 | 1.0 | 16.4 | 12.0 | 12.0 |
TF-IDF_Top_HC_C | 14.6 | 17.0 | 17.4 | 15.4 | 1.0 | 1.0 | 18.0 | 14.5 | 12.4 |
TF-IDF_Var_Kmeans | 7.2 | 10.6 | 19.0 | 24.2 | 10.0 | 1.0 | 25.8 | 21.5 | 15.0 |
TF-IDF_Var_sKmeans | 11.0 | 15.2 | 19.4 | 18.2 | 1.0 | 1.0 | 20.2 | 4.5 | 11.3 |
TF-IDF_Bin_HC_E | 21.0 | 21.4 | 17.4 | 14.6 | 1.0 | 1.0 | 17.0 | 19.5 | 14.1 |
TF-IDF_Bin_HC_P | 13.6 | 9.4 | 8.4 | 9.2 | 1.0 | 1.0 | 8.0 | 6.0 | 7.1 |
TF-IDF_Bin_HC_C | 14.0 | 10.8 | 11.4 | 9.2 | 1.0 | 1.0 | 10.6 | 8.5 | 8.3 |
TF-IDF_Bin_HC_J | 17.4 | 13.2 | 13.4 | 9.8 | 1.0 | 1.0 | 12.8 | 14.0 | 10.3 |
TF-IDF_Bin_Greedy_E | 11.6 | 7.4 | 7.2 | 8.8 | 18.8 | 5.8 | 23.8 | 27.0 | 13.8 |
TF-IDF_Bin_Greedy_P | 4.6 | 4.6 | 5.2 | 2.4 | 5.0 | 1.0 | 19.0 | 12.0 | 6.7 |
TF-IDF_Bin_Greedy_C | 5.2 | 5.2 | 7.8 | 2.8 | 23.2 | 1.0 | 19.4 | 28.0 | 11.6 |
TF-IDF_Bin_Greedy_J | 16.2 | 9.4 | 10.6 | 6.4 | 5.8 | 1.0 | 18.0 | 24.5 | 11.5 |
TF-IDF_Bin_Louvain_E | 5.8 | 2.0 | 3.2 | 2.4 | 5.0 | 1.0 | 4.2 | 13.0 | 4.6 |
TF-IDF_Bin_Louvain_P | 1.0 | 1.4 | 1.8 | 1.4 | 1.0 | 1.0 | 14.2 | 4.0 | 3.2 |
TF-IDF_Bin_Louvain_C | 1.2 | 2.0 | 1.6 | 1.0 | 1.0 | 1.0 | 1.2 | 11.5 | 2.6 |
TF-IDF_Bin_Louvain_J | 9.6 | 6.2 | 6.0 | 2.8 | 18.4 | 1.0 | 11.8 | 7.0 | 7.9 |