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Table 1 Average ranks based on micro-accuracy

From: Single cell RNA-seq data clustering using TF-IDF based methods

Methods M Nc R N M N R Nc B Nk B Mc 7-class Pancreas Avg.
Seurat 14.6 19.0 25.0 25.6 1.0 25.6 28.0 4.0 17.9
Seurat_SNN 6.8 13.8 21.0 18.4 1.0 25.6 26.6 1.0 14.3
tSNE_Kmeans 26.0 27.0 14.6 18.6 22.6 27.8 11.4 19.5 20.9
tSNE_HC_E 25.0 25.4 12.6 18.0 6.0 11.2 10.0 20.0 16.0
Log_PCA_GMM 20.8 10.6 2.4 12.8 1.0 1.0 4.4 14.5 8.4
Log_PCA_Kmeans 24.4 24.4 26.4 26.8 1.0 1.0 7.6 14.0 15.7
Log_PCA_HC_E 23.8 22.8 22.6 23.8 1.0 1.0 4.6 14.0 14.2
Log_PCA_HC_P 27.0 25.2 25.4 26.0 16.4 6.0 2.4 18.5 18.4
Log_Louvain_E 26.2 27.2 25.8 21.0 15.4 6.2 10.4 14.0 18.3
TF-IDF_Top_Kmeans 6.0 16.8 15.8 17.0 1.0 1.0 9.2 21.0 11.0
TF-IDF_Top_sKmeans 2.0 7.4 7.0 2.4 1.0 1.0 8.4 9.5 4.8
TF-IDF_Top_HC_E 20.4 21.0 24.4 23.4 1.0 1.0 19.8 18.5 16.2
TF-IDF_Top_HC_P 14.8 15.8 19.2 16.0 1.0 1.0 16.4 12.0 12.0
TF-IDF_Top_HC_C 14.6 17.0 17.4 15.4 1.0 1.0 18.0 14.5 12.4
TF-IDF_Var_Kmeans 7.2 10.6 19.0 24.2 10.0 1.0 25.8 21.5 15.0
TF-IDF_Var_sKmeans 11.0 15.2 19.4 18.2 1.0 1.0 20.2 4.5 11.3
TF-IDF_Bin_HC_E 21.0 21.4 17.4 14.6 1.0 1.0 17.0 19.5 14.1
TF-IDF_Bin_HC_P 13.6 9.4 8.4 9.2 1.0 1.0 8.0 6.0 7.1
TF-IDF_Bin_HC_C 14.0 10.8 11.4 9.2 1.0 1.0 10.6 8.5 8.3
TF-IDF_Bin_HC_J 17.4 13.2 13.4 9.8 1.0 1.0 12.8 14.0 10.3
TF-IDF_Bin_Greedy_E 11.6 7.4 7.2 8.8 18.8 5.8 23.8 27.0 13.8
TF-IDF_Bin_Greedy_P 4.6 4.6 5.2 2.4 5.0 1.0 19.0 12.0 6.7
TF-IDF_Bin_Greedy_C 5.2 5.2 7.8 2.8 23.2 1.0 19.4 28.0 11.6
TF-IDF_Bin_Greedy_J 16.2 9.4 10.6 6.4 5.8 1.0 18.0 24.5 11.5
TF-IDF_Bin_Louvain_E 5.8 2.0 3.2 2.4 5.0 1.0 4.2 13.0 4.6
TF-IDF_Bin_Louvain_P 1.0 1.4 1.8 1.4 1.0 1.0 14.2 4.0 3.2
TF-IDF_Bin_Louvain_C 1.2 2.0 1.6 1.0 1.0 1.0 1.2 11.5 2.6
TF-IDF_Bin_Louvain_J 9.6 6.2 6.0 2.8 18.4 1.0 11.8 7.0 7.9
  1. The lowest five average ranks (including ties) for each dataset are typeset in bold, and the best overall average rank is shown in italic