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Table 2 Average ranks based on macro-accuracy

From: Single cell RNA-seq data clustering using TF-IDF based methods

Methods

M Nc

R N

M N

R Nc

B Nk

B Mc

7-class

Pancreas

Avg.

Seurat

8.2

8.0

18.8

24.2

1.0

26.4

27.2

10.0

15.5

Seurat_SNN

9.0

9.2

18.0

19.4

1.0

27.0

27.0

3.5

14.3

tSNE_Kmeans

24.2

24.0

9.0

14.8

22.4

26.6

11.6

18.5

18.9

tSNE_HC_E

24.4

24.8

9.4

18.2

6.2

10.4

9.2

20.0

15.3

Log_PCA_GMM

20.4

6.4

3.0

4.8

1.0

1.0

4.4

14.0

6.9

Log_PCA_Kmeans

27.2

27.4

26.6

26.8

1.0

1.0

7.6

16.0

16.7

Log_PCA_HC_E

27.2

24.8

22.0

24.6

1.0

1.0

4.8

13.5

14.9

Log_PCA_HC_P

25.8

23.8

17.8

20.6

16.2

5.6

2.4

18.0

16.3

Log_Louvain_E

23.0

25.6

20.8

14.2

15.0

5.8

10.6

14.5

16.2

TF-IDF_Top_Kmeans

9.6

13.4

18.6

13.6

1.0

1.0

9.6

18.5

10.7

TF-IDF_Top_sKmeans

4.2

9.4

8.0

6.2

1.0

1.0

8.6

12.5

6.4

TF-IDF_Top_HC_E

21.4

19.2

25.6

23.6

1.0

1.0

17.4

13.0

15.3

TF-IDF_Top_HC_P

17.6

17.4

20.4

20.6

1.0

1.0

18.2

11.5

13.5

TF-IDF_Top_HC_C

17.0

16.2

20.6

21.2

1.0

1.0

20.4

12.5

13.7

TF-IDF_Var_Kmeans

12.0

21.0

27.4

27.6

19.6

19.0

26.4

24.0

22.1

TF-IDF_Var_sKmeans

11.8

18.0

23.4

18.6

1.0

1.0

21.6

2.5

12.2

TF-IDF_Bin_HC_E

20.2

22.2

19.8

16.6

1.0

1.0

19.2

21.0

15.1

TF-IDF_Bin_HC_P

15.4

13.2

12.0

12.2

1.0

1.0

8.4

4.5

8.5

TF-IDF_Bin_HC_C

15.8

15.2

13.2

11.4

1.0

1.0

10.8

5.5

9.2

TF-IDF_Bin_HC_J

17.8

15.8

14.0

12.8

1.0

1.0

13.0

12.0

10.9

TF-IDF_Bin_Greedy_E

7.0

5.2

5.4

4.8

20.0

1.0

23.0

27.0

11.7

TF-IDF_Bin_Greedy_P

3.8

4.2

4.4

2.2

1.0

9.8

19.2

11.0

7.0

TF-IDF_Bin_Greedy_C

4.8

5.0

5.6

3.2

1.0

9.8

19.4

26.5

9.4

TF-IDF_Bin_Greedy_J

13.8

10.2

11.0

6.2

10.2

1.0

16.2

22.0

11.3

TF-IDF_Bin_Louvain_E

4.4

2.6

3.4

6.4

1.0

1.0

4.2

16.0

4.9

TF-IDF_Bin_Louvain_P

1.2

3.4

2.4

2.4

10.0

1.0

11.2

4.0

4.5

TF-IDF_Bin_Louvain_C

1.0

3.0

1.8

2.4

5.2

1.0

1.2

11.5

3.4

TF-IDF_Bin_Louvain_J

9.4

8.2

9.8

5.4

5.6

1.0

12.0

6.5

7.2

  1. The lowest five average ranks (including ties) for each dataset are typeset in bold, and the best overall average rank is shown in italic