From: Single cell RNA-seq data clustering using TF-IDF based methods
Methods | M Nc | R N | M N | R Nc | B Nk | B Mc | 7-class | Pancreas | Avg. |
---|---|---|---|---|---|---|---|---|---|
Seurat | 8.2 | 8.0 | 18.8 | 24.2 | 1.0 | 26.4 | 27.2 | 10.0 | 15.5 |
Seurat_SNN | 9.0 | 9.2 | 18.0 | 19.4 | 1.0 | 27.0 | 27.0 | 3.5 | 14.3 |
tSNE_Kmeans | 24.2 | 24.0 | 9.0 | 14.8 | 22.4 | 26.6 | 11.6 | 18.5 | 18.9 |
tSNE_HC_E | 24.4 | 24.8 | 9.4 | 18.2 | 6.2 | 10.4 | 9.2 | 20.0 | 15.3 |
Log_PCA_GMM | 20.4 | 6.4 | 3.0 | 4.8 | 1.0 | 1.0 | 4.4 | 14.0 | 6.9 |
Log_PCA_Kmeans | 27.2 | 27.4 | 26.6 | 26.8 | 1.0 | 1.0 | 7.6 | 16.0 | 16.7 |
Log_PCA_HC_E | 27.2 | 24.8 | 22.0 | 24.6 | 1.0 | 1.0 | 4.8 | 13.5 | 14.9 |
Log_PCA_HC_P | 25.8 | 23.8 | 17.8 | 20.6 | 16.2 | 5.6 | 2.4 | 18.0 | 16.3 |
Log_Louvain_E | 23.0 | 25.6 | 20.8 | 14.2 | 15.0 | 5.8 | 10.6 | 14.5 | 16.2 |
TF-IDF_Top_Kmeans | 9.6 | 13.4 | 18.6 | 13.6 | 1.0 | 1.0 | 9.6 | 18.5 | 10.7 |
TF-IDF_Top_sKmeans | 4.2 | 9.4 | 8.0 | 6.2 | 1.0 | 1.0 | 8.6 | 12.5 | 6.4 |
TF-IDF_Top_HC_E | 21.4 | 19.2 | 25.6 | 23.6 | 1.0 | 1.0 | 17.4 | 13.0 | 15.3 |
TF-IDF_Top_HC_P | 17.6 | 17.4 | 20.4 | 20.6 | 1.0 | 1.0 | 18.2 | 11.5 | 13.5 |
TF-IDF_Top_HC_C | 17.0 | 16.2 | 20.6 | 21.2 | 1.0 | 1.0 | 20.4 | 12.5 | 13.7 |
TF-IDF_Var_Kmeans | 12.0 | 21.0 | 27.4 | 27.6 | 19.6 | 19.0 | 26.4 | 24.0 | 22.1 |
TF-IDF_Var_sKmeans | 11.8 | 18.0 | 23.4 | 18.6 | 1.0 | 1.0 | 21.6 | 2.5 | 12.2 |
TF-IDF_Bin_HC_E | 20.2 | 22.2 | 19.8 | 16.6 | 1.0 | 1.0 | 19.2 | 21.0 | 15.1 |
TF-IDF_Bin_HC_P | 15.4 | 13.2 | 12.0 | 12.2 | 1.0 | 1.0 | 8.4 | 4.5 | 8.5 |
TF-IDF_Bin_HC_C | 15.8 | 15.2 | 13.2 | 11.4 | 1.0 | 1.0 | 10.8 | 5.5 | 9.2 |
TF-IDF_Bin_HC_J | 17.8 | 15.8 | 14.0 | 12.8 | 1.0 | 1.0 | 13.0 | 12.0 | 10.9 |
TF-IDF_Bin_Greedy_E | 7.0 | 5.2 | 5.4 | 4.8 | 20.0 | 1.0 | 23.0 | 27.0 | 11.7 |
TF-IDF_Bin_Greedy_P | 3.8 | 4.2 | 4.4 | 2.2 | 1.0 | 9.8 | 19.2 | 11.0 | 7.0 |
TF-IDF_Bin_Greedy_C | 4.8 | 5.0 | 5.6 | 3.2 | 1.0 | 9.8 | 19.4 | 26.5 | 9.4 |
TF-IDF_Bin_Greedy_J | 13.8 | 10.2 | 11.0 | 6.2 | 10.2 | 1.0 | 16.2 | 22.0 | 11.3 |
TF-IDF_Bin_Louvain_E | 4.4 | 2.6 | 3.4 | 6.4 | 1.0 | 1.0 | 4.2 | 16.0 | 4.9 |
TF-IDF_Bin_Louvain_P | 1.2 | 3.4 | 2.4 | 2.4 | 10.0 | 1.0 | 11.2 | 4.0 | 4.5 |
TF-IDF_Bin_Louvain_C | 1.0 | 3.0 | 1.8 | 2.4 | 5.2 | 1.0 | 1.2 | 11.5 | 3.4 |
TF-IDF_Bin_Louvain_J | 9.4 | 8.2 | 9.8 | 5.4 | 5.6 | 1.0 | 12.0 | 6.5 | 7.2 |