Table 1 KS Test trimmed and normalized read count cutoffs and numbers of genes after each filter
From: eQTL discovery and their association with severe equine asthma in European Warmblood horses
Treatment | MCK | LPS | RCA | HDE | Mean |
|---|---|---|---|---|---|
All NCBI Genes | 26,707 | 26,707 | 26,707 | 26,707 | 26,707 |
Number of genes with > 1 read mapped | 23,804 | 23,855 | 23,869 | 23,899 | 23,857 |
Number of genes after mean cutoff | 13,058 | 12,520 | 12,792 | 12,574 | 12,736 |
Number of genes after mean cutoff and common to all four treatments | 12,254 | ||||
KS-Test: Mean Read Count Cutoff | 20 | 23 | 22 | 24 | 22.25 |
KS-Test: Median Read Count Cutoff | 18 | 20 | 20 | 24 | 20.5 |