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Table 1 KS Test trimmed and normalized read count cutoffs and numbers of genes after each filter

From: eQTL discovery and their association with severe equine asthma in European Warmblood horses

Treatment MCK LPS RCA HDE Mean
All NCBI Genes 26,707 26,707 26,707 26,707 26,707
Number of genes with > 1 read mapped 23,804 23,855 23,869 23,899 23,857
Number of genes after mean cutoff 13,058 12,520 12,792 12,574 12,736
Number of genes after mean cutoff and common to all four treatments 12,254
KS-Test: Mean Read Count Cutoff 20 23 22 24 22.25
KS-Test: Median Read Count Cutoff 18 20 20 24 20.5
  1. Four in vitro treatments of PBMCs from European Warmblood horses: no treatment (MCK), lipopolysaccharide (LPS), recombinant cyathostomin antigen (RCA), and hay dust extract (HDE) [9]