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Table 2 Number of significant eQTLs identified and sorted according to confidence level in all treatments and all models

From: eQTL discovery and their association with severe equine asthma in European Warmblood horses

Treatment: MCK LPS RCA HDE Mean
  Linear Model, Cis eQTLs, FDR < 0.05
Matrix eQTL: Number of eQTLs, All 5045 5750 5218 6127 5535
Matrix eQTL: Number of eQTLs, Low Confidence 1207 1250 1153 1266 1219
Matrix eQTL: Number of eQTLs, High Confidence 3838 4500 4065 4861 4316
  Linear Model, Trans eQTLs, FDR < 0.05
Matrix eQTL: Number of eQTLs, All 1244 1463 1088 3496 1823
Matrix eQTL: Number of eQTLs, Low Confidence 397 379 294 800 468
Matrix eQTL: Number of eQTLs, High Confidence 847 1084 794 2696 1244