Skip to main content

Table 2 SNPS that differentiate between Miyagi and Nagahama of Aki based on MAF differences

From: Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project

test

rsid (dbSNP 138)

Chr

Pos (hg19)

Miyagi

Nagahama

Aki

p-value

Annotation

Nagahama-Miyagi

rs1899621

3

157280172

0.03178

0.1795

0.0625

4.44.E-07

PQLC2L: Intronic

Nagahama-Miyagi

rs9501875

6

2685970

0.09331

0.2949

0.04688

8.41.E-07

MYLK4: Intronic

Nagahama-Miyagi

rs148081741

6

135758259

0.02944

0.2051

0.01562

4.32.E-09

AHI1: Intronic

Nagahama-Miyagi

rs141380643

6

135812869

0.02897

0.2051

0.01562

3.54.E-09

AHI1: Intronic

Nagahama-Miyagi

chr7:144127237:C:T

7

144127237

0.0323

0.1795

0.1406

5.31.E-07

intergenic

Nagahama-Miyagi

rs55897843

10

28739479

0.01731

0.1538

0

4.98.E-08

LOC105376468: Intronic

Nagahama-Miyagi

chr11:32314153:G:A

11

32314153

0.03087

0.1795

0.09375

3.26.E-07

intergenic

Nagahama-Miyagi

chr16:47678044:A:T

16

47678044

0.01457

0.1282

0.0625

7.88.E-07

PHKB: Intronic

Nagahama-Miyagi

rs8094961

18

14267309

0.009615

0.1154

0

3.69.E-07

intergenic

Nagahama-Miyagi

rs57064200

21

46286788

0.3396

0.6282

0.371

3.86.E-07

PTTG1IP: Intronic

Aki-Miyagi

rs117933761

1

100267335

0.01402

0.03846

0.1562

8.90.E-08

intergenic

Aki-Miyagi

rs4922078

8

19512537

0.3312

0.359

0.6406

7.15.E-07

CSGALNACT1: Intronic

Aki-Miyagi

rs9423657

10

5607370

0.02682

0.03846

0.1875

3.33.E-07

LOC105376381: Intronic

Aki-Miyagi

rs10899501

11

78131408

0.4565

0.4359

0.1452

3.96.E-07

intergenic

Aki-Miyagi

chr13:103019948:C:T

13

103019948

0.0565

0.1923

0.25

7.78.E-07

FGF14: Intronic

Aki-Miyagi

rs118020607

14

99987537

0.06232

0.1026

0.2656

5.24.E-07

CCDC85C: Intronic

Aki-Miyagi

rs59993898

15

80826474

0.009813

0.01282

0.125

8.60.E-07

ARNT2: Intronic

Aki-Miyagi

rs150711498

18

21327345

0.008879

0.01282

0.125

4.66.E-07

LAMA3: Intronic

Aki-Miyagi

rs11669387

19

33999497

0.1076

0.141

0.3438

7.66.E-07

PEPD: Intronic