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Table 2 Numbers of Y-chromosome bases, Y-SNPs and haplogroups retrieved

From: In-solution Y-chromosome capture-enrichment on ancient DNA libraries

Sample Condition Positions recovered Total SNPs Ancestral SNPs Derived SNPs Haplogroup retrieved
STM1 All 2,205,331 12,061 11,625 436 R1b-M343
Pre-capture 93,725 595 577 18 R1b-M343
YCC 1,372,731 8103 7805 298 R1b-M343
WGC 354,255 2414 2321 93 R1b-M343
WGC + YCC 493,085 2971 2871 100 R1b-M343
STM2 All 428,846 2183 2091 92 E1b1a1a1-M80
Pre-capture 19,994 109 100 9 E1b1a1a1-M80
YCC 220,732 1262 1215 47 E1b1a1-M2
WGC 109,411 760 726 34 E1b1a1a1-M80
WGC + YCC 219,152 114 110 4 CT-M168
PI174 All 3224 19 18 1 A1-V168
Pre-capture 129 0 0 0
YCC 1993 12 11 1 A1-V168
WGC 147 2 2 0 A1-V168
WGC + YCC 1818 11 10 1 A1-V168
PI383 All 7738 46 45 1 P-M45
Pre-capture 146 0 0 0
YCC 1809 13 12 1 P-M45
WGC 473 5 5 0 P-M45
WGC + YCC 6890 42 41 1 P-M45
PI435 All 16,469 100 97 3 BT-M42
Pre-capture 164 0 0 0
YCC 1918 15 15 0 BT-M42
WGC 2632 18 18 0
WGC + YCC 12,399 86 83 3 BT-M42
PI437 All 3444 14 14 0
Pre-capture 103 0 0 0
YCC 938 6 6 0
WGC 296 0 0 0
WGC + YCC 2320 11 11 0