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Table 2 Number of predicted neo-antigen peptides presented by MHC Class II molecule HLA DRB1

From: MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

HLA allele

No. of strong-binding neo-antigens

No. of weak-binding neo-antigens

Total neo-antigens

HLA frequency in Caucasian population

P value

Q value

DRB1*01:02

88

1174

1262

1.40%

1.57E-24

4.86E-23

DRB1*12:01

98

1046

1144

1.60%

9.03E-24

1.40E-22

DRB1*11:04

48

756

804

2.90%

4.04E-23

4.18E-22

DRB1*01:01

54

896

950

8.60%

1.93E-22

1.50E-21

DRB1*01:03

4

392

396

1.20%

1.11E-06

6.86E-06

DRB1*13:03

3

385

388

1.10%

6.80E-05

3.51E-04

DRB1*16:02

22

293

315

0.15%

2.52E-01

1.00E + 00

DRB1*03:01

4

303

307

12.20%

4.31E-01

1.00E + 00

DRB1*11:03

2

248

250

0.61%

9.68E-01

1.00E + 00

DRB1*08:03

3

225

228

0.24%

1.00E + 00

1.00E + 00

DRB1*07:01

6

217

223

13.40%

1.00E + 00

1.00E + 00

DRB1*04:05

3

217

220

0.67%

1.00E + 00

1.00E + 00

DRB1*04:01

2

213

215

8.80%

1.00E + 00

1.00E + 00

DRB1*08:04

7

190

197

0.20%

1.00E + 00

1.00E + 00

DRB1*10:01

12

179

191

0.85%

1.00E + 00

1.00E + 00

DRB1*09:01

4

175

179

1.00%

1.00E + 00

1.00E + 00

DRB1*04:04

0

151

151

3.90%

1.00E + 00

1.00E + 00

DRB1*13:05

4

137

141

0.25%

1.00E + 00

1.00E + 00

DRB1*13:02

0

137

137

4.90%

1.00E + 00

1.00E + 00

DRB1*16:01

1

124

125

1.40%

1.00E + 00

1.00E + 00

DRB1*08:01

2

121

123

2.30%

1.00E + 00

1.00E + 00

DRB1*11:01

4

116

120

5.60%

1.00E + 00

1.00E + 00

DRB1*13:01

0

116

116

5.60%

1.00E + 00

1.00E + 00

DRB1*11:02

0

113

113

0.28%

1.00E + 00

1.00E + 00

DRB1*04:08

0

107

107

0.39%

1.00E + 00

1.00E + 00

DRB1*15:01

2

103

105

13.50%

1.00E + 00

1.00E + 00

DRB1*14:01

1

88

89

2.60%

1.00E + 00

1.00E + 00

DRB1*15:02

0

55

55

0.72%

1.00E + 00

1.00E + 00

DRB1*04:07

0

54

54

1.10%

1.00E + 00

1.00E + 00

DRB1*04:03

1

49

50

0.79%

1.00E + 00

1.00E + 00

DRB1*04:02

0

49

49

1.10%

1.00E + 00

1.00E + 00

  1. MHCII molecules which are significantly more frequent in presenting neo-antigens were labelled as bold according to P values. Significant levels were calculated using one sided Mann-Whitney U test