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Table 1 List of strains isolated, sequenced and analysed in this study

From: Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures

Phylum Family Species ID rRNA % sim.a genome (bp) GC (%)
Actinobacteria Coriobacteriaceae Collinsella intestinalis An268 94 2,375,164 65.28
Actinobacteria Coriobacteriaceae Collinsella intestinalis An7 95 2,368,937 65.33
Actinobacteria Coriobacteriaceae Collinsella intestinalis An307 96 2,218,890 62.95
Actinobacteria Coriobacteriaceae Collinsella tanakaei An271 96 2,790,023 64.34
Actinobacteria Coriobacteriaceae Collinsella tanakaei An2 94 2,542,639 62.39
Actinobacteria Coriobacteriaceae Enorma massiliensis An70 99 2,374,054 62.09
Actinobacteria Coriobacteriaceae Enorma timonensis An5 96 2,299,978 65.99
Actinobacteria Coriobacteriaceae Gordonibacter urolithinfaciens An234A 99 3,542,488 65.99
Actinobacteria Coriobacteriaceae Gordonibacter urolithinfaciens An232A 94 3,457,314 65.16
Actinobacteria Coriobacteriaceae Gordonibacter urolithinfaciens An230 94 3,885,330 64.16
Actinobacteria Coriobacteriaceae Olsenella uli An188 96 2,138,506 68.68
Actinobacteria Coriobacteriaceae Olsenella uli An290 96 2,158,343 68.09
Actinobacteria Coriobacteriaceae Olsenella uli An285 96 2,413,556 66.98
Actinobacteria Coriobacteriaceae Olsenella uli An293 96 2,318,914 67.87
Actinobacteria Coriobacteriaceae Olsenella uli An270 96 2,014,154 67.55
Bacteroidetes Bacteroidaceae Bacteroides clarus An43 99 4,226,284 45.22
Bacteroidetes Bacteroidaceae Bacteroides clarus An189 99 4,166,078 45.36
Bacteroidetes Bacteroidaceae Bacteroides dorei An16 99 5,376,103 41.79
Bacteroidetes Bacteroidaceae Bacteroides dorei An41 99 5,463,463 42.00
Bacteroidetes Bacteroidaceae Bacteroides ovatus An161 99 6,700,861 42.08
Bacteroidetes Bacteroidaceae Bacteroides salanitronis An322 92 3,449,415 44.84
Bacteroidetes Bacteroidaceae Bacteroides uniformis An67 99 4,590,834 46.36
Bacteroidetes Bacteroidaceae Bacteroides xylanisolvens An109 99 5,713,108 41.57
Bacteroidetes Bacteroidaceae Bacteroides xylanisolvens An107 99 5,745,201 41.89
Bacteroidetes Bacteroidaceae Mediterranea massiliensis An20 91 3,968,548 49.41
Bacteroidetes Porphyromonadaceae Barnesiella viscericola An22 98 3,264,150 53.04
Bacteroidetes Porphyromonadaceae Barnesiella viscericola An55 98 3,040,531 51.37
Bacteroidetes Porphyromonadaceae Butyricimonas paravirosa An62 98 5,176,855 42.63
Bacteroidetes Porphyromonadaceae Muribaculum intestinale An289 83 2,336,263 49.09
Bacteroidetes Porphyromonadaceae Muribaculum intestinale An287 83 2,349,712 49.04
Bacteroidetes Porphyromonadaceae Odoribacter splanchnicus An45 99 4,610,398 43.75
Bacteroidetes Porphyromonadaceae Odoribacter splanchnicus An39 99 4,722,515 43.48
Bacteroidetes Porphyromonadaceae Parabacteroides distasonis An199 99 5,145,110 45.11
Bacteroidetes Porphyromonadaceae Parabacteroides johnsonii An42 99 4,430,164 45.03
Bacteroidetes Porphyromonadaceae Parabacteroides merdae An277 92 3,709,857 46.69
Bacteroidetes Rikenellaceae Alistipes onderdonkii An90 100 3,488,443 58.52
Bacteroidetes Rikenellaceae Alistipes senegalensis An31A 97 2,626,508 61.85
Bacteroidetes Rikenellaceae Alistipes senegalensis An116 97 3,264,205 58.57
Bacteroidetes Rikenellaceae Alistipes senegalensis An66 97 3,064,564 59.37
Bacteroidetes Rikenellaceae Alistipes shahii An54 96 3,272,633 58.38
Bacteroidetes unclassified_"Bacteroidales” Bacteroides salanitronis An269 92 4,466,522 45.87
Bacteroidetes unclassified_"Bacteroidales” Bacteroides salanitronis An279 92 3,976,735 45.82
Bacteroidetes unclassified_"Bacteroidales” Bacteroides salanitronis An19 92 4,779,606 45.88
Bacteroidetes unclassified_"Bacteroidales” Bacteroides salanitronis An51A 92 4,415,476 45.79
Firmicutes Enterococcaceae Enterococcus cecorum An69 100 2,010,800 36.66
Firmicutes Enterococcaceae Enterococcus cecorum An144 100 2,521,030 36.10
Firmicutes Lactobacillaceae Lactobacillus gallinarum An119 99 2,068,702 36.50
Firmicutes Lactobacillaceae Lactobacillus gallinarum An153 99 2,042,196 36.47
Firmicutes Lactobacillaceae Lactobacillus gallinarum An115 99 2,039,377 36.52
Firmicutes Lactobacillaceae Lactobacillus gallinarum An101 99 2,051,080 36.54
Firmicutes Lactobacillaceae Lactobacillus gasseri An197 99 1,786,561 34.60
Firmicutes Lactobacillaceae Lactobacillus reuteri An71 99 2,330,171 38.47
Firmicutes Lactobacillaceae Lactobacillus reuteri An166 99 2,293,009 38.50
Firmicutes Lactobacillaceae Lactobacillus salivarius An63 99 1,826,390 32.76
Firmicutes Lactobacillaceae Lactobacillus salivarius An84 99 2,115,320 32.74
Firmicutes Lactobacillaceae Lactobacillus salivarius An128 99 1,900,005 32.75
Firmicutes Erysipelotrichaceae [Clostridium] spiroforme An158 99 2,749,214 28.90
Firmicutes Erysipelotrichaceae [Clostridium] spiroforme An15 94 3,043,058 30.24
Firmicutes Erysipelotrichaceae [Clostridium] spiroforme An26 99 2,686,825 28.58
Firmicutes Erysipelotrichaceae [Clostridium] spiroforme An149 99 2,786,011 28.86
Firmicutes Erysipelotrichaceae [Clostridium] spiroforme An173 94 2,963,161 30.12
Firmicutes Erysipelotrichaceae [Eubacterium] cylindroides An64 99 1,822,768 34.80
Firmicutes Erysipelotrichaceae [Eubacterium] cylindroides An178 99 1,979,688 34.75
Firmicutes Erysipelotrichaceae Massiliomicrobiota timonensis An13 100 2,808,053 31.46
Firmicutes Erysipelotrichaceae Massiliomicrobiota timonensis An142 98 2,805,108 31.51
Firmicutes Erysipelotrichaceae Massiliomicrobiota timonensis An134 98 2,583,105 31.58
Firmicutes Erysipelotrichaceae Massiliomicrobiota timonensis An105 98 2,657,304 31.69
Firmicutes Erysipelotrichaceae Massiliomicrobiota timonensis An80 98 2,632,118 31.88
Firmicutes Clostridiaceae 1 Clostridium perfringens An68 99 3,279,733 28.07
Firmicutes Clostridiaceae 1 Clostridium perfringens An185 99 3,267,175 28.06
Firmicutes Lachnospiraceae [Clostridium] glycyrrhizinilyticum An169 96 4,874,615 49.44
Firmicutes Lachnospiraceae [Clostridium] glycyrrhizinilyticum An298 96 3,190,622 46.76
Firmicutes Lachnospiraceae [Clostridium] glycyrrhizinilyticum An76 96 3,392,322 50.34
Firmicutes Lachnospiraceae [Clostridium] lactatifermentans An114 95 2,765,027 31.21
Firmicutes Lachnospiraceae [Clostridium] lactatifermentans An75 99 3,241,294 44.78
Firmicutes Lachnospiraceae [Clostridium] oroticum An181 95 2,778,317 43.19
Firmicutes Lachnospiraceae [Clostridium] saccharolyticum An14 95 4,319,160 54.42
Firmicutes Lachnospiraceae [Clostridium] saccharolyticum An168 99 3,501,825 50.31
Firmicutes Lachnospiraceae [Clostridium] saccharolyticum An196 93 3,261,385 50.05
Firmicutes Lachnospiraceae [Eubacterium] contortum An118 95 3,480,620 52.25
Firmicutes Lachnospiraceae [Eubacterium] fissicatena An131 94 3,529,099 50.87
Firmicutes Lachnospiraceae [Eubacterium] fissicatena An138 94 3,702,317 50.44
Firmicutes Lachnospiraceae [Eubacterium] hallii An3 95 4,260,545 46.43
Firmicutes Lachnospiraceae [Eubacterium] hallii An11 95 3,929,296 46.78
Firmicutes Lachnospiraceae Blautia coccoides An46 94 3,844,348 44.62
Firmicutes Lachnospiraceae Blautia producta An81 95 4,340,741 44.56
Firmicutes Lachnospiraceae Blautia schinkii An249 93 3,969,115 45.08
Firmicutes Lachnospiraceae Drancourtella massiliensis An210 95 3,049,918 45.07
Firmicutes Lachnospiraceae Drancourtella massiliensis An177 95 2,986,142 44.76
Firmicutes Lachnospiraceae Drancourtella massiliensis An57 95 3,307,621 45.72
Firmicutes Lachnospiraceae Drancourtella massiliensis An12 96 3,637,323 46.18
Firmicutes Ruminococcaceae Anaerofilum agile An201 91 3,232,216 60.34
Firmicutes Ruminococcaceae Anaeromassilibacillus senegalensis An200 94 3,738,663 54.30
Firmicutes Ruminococcaceae Anaeromassilibacillus senegalensis An250 97 3,582,839 53.28
Firmicutes Ruminococcaceae Anaeromassilibacillus senegalensis An172 92 2,820,032 41.40
Firmicutes Ruminococcaceae Anaerotruncus colihominis An174 99 4,104,028 53.46
Firmicutes Ruminococcaceae Anaerotruncus colihominis An175 99 4,098,164 53.45
Firmicutes Ruminococcaceae Anaerotruncus colihominis An251 99 3,446,606 54.60
Firmicutes Ruminococcaceae Butyricicoccus pullicaecorum An179 99 3,474,625 53.61
Firmicutes Ruminococcaceae Butyricicoccus pullicaecorum An180 99 3,016,034 54.43
Firmicutes Ruminococcaceae Faecalibacterium prausnitzii An121 95 2,728,163 61.06
Firmicutes Ruminococcaceae Faecalibacterium prausnitzii An77 96 3,092,450 59.48
Firmicutes Ruminococcaceae Faecalibacterium prausnitzii An192 97 3,520,066 58.80
Firmicutes Ruminococcaceae Faecalibacterium prausnitzii An122 96 3,272,200 59.47
Firmicutes Ruminococcaceae Faecalibacterium prausnitzii An58 96 2,956,350 60.63
Firmicutes Ruminococcaceae Flavonifractor plautii An91 97 3,629,120 57.60
Firmicutes Ruminococcaceae Flavonifractor plautii An52 97 2,845,789 59.13
Firmicutes Ruminococcaceae Flavonifractor plautii An92 98 3,498,453 62.13
Firmicutes Ruminococcaceae Flavonifractor plautii An112 97 2,967,986 59.27
Firmicutes Ruminococcaceae Flavonifractor plautii An135 98 3,907,586 61.45
Firmicutes Ruminococcaceae Flavonifractor plautii An82 97 3,683,590 58.85
Firmicutes Ruminococcaceae Flavonifractor plautii An248 100 3,776,725 60.99
Firmicutes Ruminococcaceae Flavonifractor plautii An4 97 3,239,670 58.22
Firmicutes Ruminococcaceae Flavonifractor plautii An9 97 3,357,728 58.20
Firmicutes Ruminococcaceae Flavonifractor plautii An100 95 3,054,748 57.15
Firmicutes Ruminococcaceae Flavonifractor plautii An306 98 3,967,264 59.00
Firmicutes Ruminococcaceae Flavonifractor plautii An10 96 3,867,419 61.74
Firmicutes Ruminococcaceae Gemmiger formicilis An50 94 3,597,344 58.67
Firmicutes Ruminococcaceae Gemmiger formicilis An194 95 3,080,663 59.30
Firmicutes Ruminococcaceae Gemmiger formicilis An87 94 3,355,244 58.58
Firmicutes Ruminococcaceae Gemmiger formicilis An120 95 3,406,814 60.15
Firmicutes Ruminococcaceae Pseudoflavonifractor capillosus An176 96 2,574,287 58.19
Firmicutes Ruminococcaceae Pseudoflavonifractor capillosus An187 96 2,623,188 57.97
Firmicutes Ruminococcaceae Pseudoflavonifractor capillosus An44 96 2,764,660 57.41
Firmicutes Ruminococcaceae Pseudoflavonifractor capillosus An85 96 3,018,026 56.20
Firmicutes Ruminococcaceae Pseudoflavonifractor capillosus An184 96 3,617,258 59.87
Firmicutes Veillonellaceae Megamonas hypermegale An288 99 2,165,576 33.61
Firmicutes Veillonellaceae Megasphaera elsdenii An286 95 2,396,433 53.29
Proteobacteria Desulfovibrionaceae Desulfovibrio desulfuricans An276 92 3,230,576 55.37
Proteobacteria Enterobacteriaceae Escherichia fergusonii An190 99 5,352,565 50.48
Synergistetes Synergistaceae Cloacibacillus porcorum An23 93 2,902,045 57.89
Verrucomicrobia Verrucomicrobiaceae Akkermansia muciniphila An78 100 2,734,062 55.68
Elusimicrobia Elusimicrobiaceae Elusimicrobium minutum An273 94 1,505,722 51.73
  1. aPercent similarity along the whole 16S rRNA sequence to the GenBank entry with the highest similarity