Table 2 The positively selected sites of PPCK1 and CT-BMY under models from HYPHY (REL, FUBAR). The sites were listed as positively selected sites if they had a posterior probability greater than 80%

Codon(FUBAR)

α

β

β-α

Posterior Prob β > α

Emp. Bayes Factor

PSRF

Neff

PPCK1

124*

0.81

2.82

2.01

0.83

10.81

219*

0.81

2.71

1.90

0.82

10.27

CT-BMY

73*

0.60

1.93

1.34

0.83

15.97

Codon(REL)

E[dS]

E[dN]

Normalized E[dN-dS]

Posterior Probability

Bayes Factor

PPCK1

124*

0.96

3.43

2.47

0.95

307.87

219*

0.97

3.41

2.44

0.94

268.09

267

1.07

3.31

2.24

0.90

155.82

273

1.06

3.32

2.25

0.90

165.39

275

1.09

3.14

2.05

0.85

97.75

276

1.07

2.85

1.78

0.77

58.35

CT-BMY

73*

0.94

0.85

−0.0961

0.75

52.6