Skip to main content

Table 2 The positively selected sites of PPCK1 and CT-BMY under models from HYPHY (REL, FUBAR). The sites were listed as positively selected sites if they had a posterior probability greater than 80%

From: Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

  Codon(FUBAR) α β β-α Posterior Prob β > α Emp. Bayes Factor PSRF Neff
PPCK1 124* 0.81 2.82 2.01 0.83 10.81 1.00 1292.65
219* 0.81 2.71 1.90 0.82 10.27 1.00 1327.29
CT-BMY 73* 0.60 1.93 1.34 0.83 15.97 1.01 491.79
Codon(REL) E[dS] E[dN] Normalized E[dN-dS] Posterior Probability Bayes Factor   
PPCK1 124* 0.96 3.43 2.47 0.95 307.87   
219* 0.97 3.41 2.44 0.94 268.09   
267 1.07 3.31 2.24 0.90 155.82   
273 1.06 3.32 2.25 0.90 165.39   
275 1.09 3.14 2.05 0.85 97.75   
276 1.07 2.85 1.78 0.77 58.35   
CT-BMY 73* 0.94 0.85 −0.0961 0.75 52.6   
  1. The * sites indicated they were identified by both models
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us