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Table 1 List of the identified genes

From: Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7

Gene name Protein name Homologous protein Bacterium aa Identity Function Accession number Reference
akbB (813 bp) AkbB AkbB R. sp. DK17 85% Dihydrodiol dehydrogenase AII11489.1 Kim et al., 2004
akbA4 (1263 bp) AkbA4 AkbA4 R. sp. DK17 81% Ferredoxin reductase AII11490.1 Kim et al., 2004
akbA3 (150 bp) AkbA3 AkbA3 R. sp. DK17 69% Ethylbenzene dioxygenase ferredoxin CP008952.1 Kim et al., 2004
akbA2a (549 bp) AkbA2a AkbA2a R. sp. DK17 84% Ethylbenzene dioxygenase small subunit AII11492.1 Kim et al., 2004
akbA1a (1323 bp) AkbA1a AkbA1a R. sp. DK17 92% Ethylbenzene dioxygenase large subunit AII11493.1 Kim et al., 2004
akbS (4812 bp) AkbS AkbS R. sp. DK17 76% Sensor kinase AII11494.1 Kim et al., 2004
akbT (534 bp) AkbT AkbT R. sp. DK17 86% Response regulator AII11495.1 Kim et al., 2004
akbF (762 bp) AkbF AkbF R. sp. DK17 63% 4-Hydroxy-2-oxovalerate aldolase AII11049.1 Kim et al., 2004
akbE (900 bp) AkbE AkbE R. sp. DK17 64% 2-Hydroxypenta-2,4-dienoate hydratase AII11050.1 Kim et al., 2004
akbD (858 bp) AkbD AkbD R. sp. DK17 67% 2-Hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase AII11051.1 Kim et al., 2004
akbC (900 bp) AkbC AkbC R. sp. DK17 87% 2,3-Dihydroxybiphenyl 1,2-dioxygenase AII11058.1 Kim et al., 2004
pheA1a (1617 bp) PheA1a PheA1 (1)
PheA1 (2)
PheA1 (3)
R. opacus 1CP 83%
93%
98%
Phenol hydroxylase AII08653.1 Gröning et al., 2014
pheA1b (573 bp) PheA1b PheA2 (1)
PheA2 (2)
PheA2 (3)
R. opacus 1CP 73%
100%
74%
Phenol hydroxylase reductase component AII08654.1 Gröning et al., 2014
pheA2a (1617 bp) PheA2a PheA1 (1)
PheA1 (2)
PheA1 (3)
R. opacus 1CP 83%
100%
92%
Phenol hydroxylase AII08806.1 Gröning et al., 2014
pheA2b (561 bp) PheA2b PheA2 (1)
PheA2 (2)
PheA2 (3)
R. opacus 1CP 69%
75%
94%
Phenol hydroxylase reductase component AII08807.1 Gröning et al., 2014
pheA3a (1617 bp) PheA3a PheA1 (1)
PheA1 (2)
PheA1 (3)
R. opacus 1CP 83%
97%
91%
Phenol hydroxylase AII10865.1 Gröning et al., 2014
pheA3b (654 bp) PheA3b PheA2 (1)
PheA2 (2)
PheA2 (3)
R. opacus 1CP 61%
64%
58%
Phenol hydroxylase reductase component CP008949.1 Gröning et al., 2014
prmA (1635 bp) PrmA PrmA R. jostii RHA1 97% Methane monooxygenase component A alpha chain AII03499.1 Sharp et al., 2007
prmC (1044 bp) PrmC PrmC R. jostii RHA1 94% Methane monooxygenase component C AII03498.1 Sharp et al., 2007
prmB (1107 bp) PrmB PrmB R. jostii RHA1 97% Methane monooxygenase component A beta chain AII03497.1 Sharp et al., 2007
prmD (342 bp) PrmD PrmD R. jostii RHA1 98% Methane monooxygenase regulatory protein AII03496.1 Sharp et al., 2007