Table 1 List of the identified genes
Gene name | Protein name | Homologous protein | Bacterium | aa Identity | Function | Accession number | Reference |
|---|---|---|---|---|---|---|---|
akbB (813 bp) | AkbB | AkbB | R. sp. DK17 | 85% | Dihydrodiol dehydrogenase | AII11489.1 | Kim et al., 2004 |
akbA4 (1263 bp) | AkbA4 | AkbA4 | R. sp. DK17 | 81% | Ferredoxin reductase | AII11490.1 | Kim et al., 2004 |
akbA3 (150 bp) | AkbA3 | AkbA3 | R. sp. DK17 | 69% | Ethylbenzene dioxygenase ferredoxin | CP008952.1 | Kim et al., 2004 |
akbA2a (549 bp) | AkbA2a | AkbA2a | R. sp. DK17 | 84% | Ethylbenzene dioxygenase small subunit | AII11492.1 | Kim et al., 2004 |
akbA1a (1323 bp) | AkbA1a | AkbA1a | R. sp. DK17 | 92% | Ethylbenzene dioxygenase large subunit | AII11493.1 | Kim et al., 2004 |
akbS (4812 bp) | AkbS | AkbS | R. sp. DK17 | 76% | Sensor kinase | AII11494.1 | Kim et al., 2004 |
akbT (534 bp) | AkbT | AkbT | R. sp. DK17 | 86% | Response regulator | AII11495.1 | Kim et al., 2004 |
akbF (762 bp) | AkbF | AkbF | R. sp. DK17 | 63% | 4-Hydroxy-2-oxovalerate aldolase | AII11049.1 | Kim et al., 2004 |
akbE (900 bp) | AkbE | AkbE | R. sp. DK17 | 64% | 2-Hydroxypenta-2,4-dienoate hydratase | AII11050.1 | Kim et al., 2004 |
akbD (858 bp) | AkbD | AkbD | R. sp. DK17 | 67% | 2-Hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | AII11051.1 | Kim et al., 2004 |
akbC (900 bp) | AkbC | AkbC | R. sp. DK17 | 87% | 2,3-Dihydroxybiphenyl 1,2-dioxygenase | AII11058.1 | Kim et al., 2004 |
pheA1a (1617 bp) | PheA1a | PheA1 (1) PheA1 (2) PheA1 (3) | R. opacus 1CP | 83% 93% 98% | Phenol hydroxylase | AII08653.1 | Gröning et al., 2014 |
pheA1b (573 bp) | PheA1b | PheA2 (1) PheA2 (2) PheA2 (3) | R. opacus 1CP | 73% 100% 74% | Phenol hydroxylase reductase component | AII08654.1 | Gröning et al., 2014 |
pheA2a (1617 bp) | PheA2a | PheA1 (1) PheA1 (2) PheA1 (3) | R. opacus 1CP | 83% 100% 92% | Phenol hydroxylase | AII08806.1 | Gröning et al., 2014 |
pheA2b (561 bp) | PheA2b | PheA2 (1) PheA2 (2) PheA2 (3) | R. opacus 1CP | 69% 75% 94% | Phenol hydroxylase reductase component | AII08807.1 | Gröning et al., 2014 |
pheA3a (1617 bp) | PheA3a | PheA1 (1) PheA1 (2) PheA1 (3) | R. opacus 1CP | 83% 97% 91% | Phenol hydroxylase | AII10865.1 | Gröning et al., 2014 |
pheA3b (654 bp) | PheA3b | PheA2 (1) PheA2 (2) PheA2 (3) | R. opacus 1CP | 61% 64% 58% | Phenol hydroxylase reductase component | CP008949.1 | Gröning et al., 2014 |
prmA (1635 bp) | PrmA | PrmA | R. jostii RHA1 | 97% | Methane monooxygenase component A alpha chain | AII03499.1 | Sharp et al., 2007 |
prmC (1044 bp) | PrmC | PrmC | R. jostii RHA1 | 94% | Methane monooxygenase component C | AII03498.1 | Sharp et al., 2007 |
prmB (1107 bp) | PrmB | PrmB | R. jostii RHA1 | 97% | Methane monooxygenase component A beta chain | AII03497.1 | Sharp et al., 2007 |
prmD (342 bp) | PrmD | PrmD | R. jostii RHA1 | 98% | Methane monooxygenase regulatory protein | AII03496.1 | Sharp et al., 2007 |