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Table 1 Statistics of RNA-seq reads and mapped reads

From: Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus

Samplesa Total raw reads Total clean reads Total clean nucleotides (bp) Mapped reads (%) Uniquely mapped reads (%)
AA-R1 63,235,082 62,967,506 8,973,601,893 76.7 68.4
AA-R2 69,562,114 68,900,748 10,037,616,256 75.6 68.2
AA-R3 32,752,136 30,728,480 4,609,272,000 65.3 60.0
CC-R1 50,069,024 49,125,050 7,075,517,555 80.3 73.1
CC-R2 69,523,248 68,890,164 9,995,606,828 81.3 46.8
CC-R3 36,039,320 32,996,098 4,949,414,700 64.1 59.1
AACC-R1 52,560,640 51,651,956 7,414,992,385 76.1 70.0
AACC -R2 48,235,332 47,798,278 6,801,312,765 77.5 60.0
AACC -R3 32,380,872 30,379,484 4,556,922,600 63.1 58.2
Total 454,357,768 443,437,764 64,414,256,982
Average 50,484,196 49,270,863 7,157,139,665 73.3 62.6
  1. aR1, R2 and R3 are three biological replicates; AA, B. rapa (cv. Yangzhouqing); CC, B. oleracea (cv. Yonglv 7); AACC, resynthesized allotetraploid B. napus