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Table 1 Metrics for de novo assembly transcriptomes

From: Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns

Summary A. simplex s.s A. pegreffii Hybrid Merged
Total transcriptome size 88,007,524 68,071,234 50,568,936 67,459,080
Unigenes (Loci) 36,645 31,988 29,656 -NA-
Transcripts (isoforms) 121,907 91,541 76,848 75,380
Longest transcript (bp) 10,774 11,724 10,798 16,240
shortest transcript (bp) 100 100 100 107
% transcripts >1Kb 20.3% 21.7% 17.9% 28.7%
N50 (bp) 973 1026 885 1276
L50 (bp) 25,878 19,118 16,598 15,385
%A 30.87% 30.25% 30.11% 30.41%
%C 19.60% 20.03% 20.36% 18.64%
%G 19.64% 19.98% 20.49% 20.60%
%T 29.89% 29.74% 29.04% 29.87%
%Ns 0% 0% 0% 0%