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Table 3 Effective population sizes (Ne) for three Chinese indigenous chicken populations

From: Genomic diversity dynamics in conserved chicken populations are revealed by genome-wide SNPs

Chromosome number

BEC

BYC

LSC

2007

2010

2015

2007

2010

2015

2010

2012

2015

Chr1

108.2

78.3

56.3

55.7

101.7

63.8

86.9

68.4

102.3

Chr2

96.4

66.6

51.4

55.5

91.0

60.6

63.5

56.8

78.9

Chr3

75.6

69.1

44.4

52.6

80.9

58.7

74.7

50.7

78.6

Chr4

70.8

53.7

28.1

34.8

51.7

57.5

63.6

56.6

63.9

Chr5

56.6

43.3

27.6

32.9

49.9

35.8

62.7

44.3

45.0

Chr6

36.9

27.9

25.9

22.3

36.0

25.6

52.1

31.9

28.3

Chr7

35.0

30.1

19.3

21.9

41.3

35.7

31.1

27.2

42.2

Chr8

30.7

37.1

22.5

16.8

30.5

20.9

34.6

32.8

32.9

Chr9

37.4

28.9

13.3

23.8

28.2

22.2

27.5

21.3

28.2

Chr10

21.4

21.7

9.1

15.1

20.9

17.2

25.4

25.0

20.9

Chr11

25.6

21.1

17.9

17.4

24.1

16.6

20.7

22.2

21.9

Chr12

39.9

29.3

23.2

19.0

30.5

24.9

31.6

30.4

25.4

Chr13

19.5

19.7

16.6

16.5

23.1

14.8

22.1

23.5

21.7

Chr14

26.0

21.7

16.6

14.8

23.5

20.8

25.5

26.2

19.6

Chr15

25.3

24.2

15.2

11.4

12.5

8.7

21.5

29.6

23.7

Chr16

3.3

5.5

3.0

2.4

3.1

2.6

2.9

4.1

2.6

Chr17

29.7

18.7

12.6

15.1

22.6

14.8

21.8

21.3

22.4

Chr18

19.2

19.8

13.3

15.6

17.7

17.4

20.5

15.5

15.7

Chr19

33.3

25.7

13.1

15.9

20.4

18.4

26.2

18.7

19.0

Chr20

24.7

24.6

15.9

8.8

16.3

14.0

26.2

22.8

18.1

Chr21

27.9

24.1

11.1

14.5

16.6

13.0

18.4

18.0

25.6

Chr22

10.5

9.7

6.9

7.5

11.5

9.0

16.4

17.2

15.9

Chr23

28.3

18.1

14.3

16.2

22.7

17.4

22.3

22.0

21.9

Chr24

20.5

16.6

11.2

14.2

19.6

16.1

19.2

23.2

17.5

Chr25

13.2

10.0

9.2

5.8

8.7

8.9

18.1

14.7

14.5

Chr26

18.8

15.6

12.7

9.4

18.5

12.2

24.5

14.9

16.5

Chr27

21.7

22.1

17.0

15.1

19.6

9.8

18.6

21.3

20.0

Chr28

19.3

14.8

13.4

12.0

20.1

15.0

22.7

16.0

17.4

Average (Chr1–5)

81.52

62.2

41.56

46.3

75.04

55.28

70.28

55.36

73.74

Average (Chr6–10)

32.28

29.14

18.02

19.98

31.38

24.32

34.14

27.64

30.5

Average (Chr11–28)

22.59

18.96

13.51

12.87

18.39

14.13

21.07

20.09

18.86

Average (all)

34.85

28.50

19.33

20.11

30.83

23.30

32.19

27.74

30.74