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Table 3 Effective population sizes (Ne) for three Chinese indigenous chicken populations

From: Genomic diversity dynamics in conserved chicken populations are revealed by genome-wide SNPs

Chromosome number BEC BYC LSC
2007 2010 2015 2007 2010 2015 2010 2012 2015
Chr1 108.2 78.3 56.3 55.7 101.7 63.8 86.9 68.4 102.3
Chr2 96.4 66.6 51.4 55.5 91.0 60.6 63.5 56.8 78.9
Chr3 75.6 69.1 44.4 52.6 80.9 58.7 74.7 50.7 78.6
Chr4 70.8 53.7 28.1 34.8 51.7 57.5 63.6 56.6 63.9
Chr5 56.6 43.3 27.6 32.9 49.9 35.8 62.7 44.3 45.0
Chr6 36.9 27.9 25.9 22.3 36.0 25.6 52.1 31.9 28.3
Chr7 35.0 30.1 19.3 21.9 41.3 35.7 31.1 27.2 42.2
Chr8 30.7 37.1 22.5 16.8 30.5 20.9 34.6 32.8 32.9
Chr9 37.4 28.9 13.3 23.8 28.2 22.2 27.5 21.3 28.2
Chr10 21.4 21.7 9.1 15.1 20.9 17.2 25.4 25.0 20.9
Chr11 25.6 21.1 17.9 17.4 24.1 16.6 20.7 22.2 21.9
Chr12 39.9 29.3 23.2 19.0 30.5 24.9 31.6 30.4 25.4
Chr13 19.5 19.7 16.6 16.5 23.1 14.8 22.1 23.5 21.7
Chr14 26.0 21.7 16.6 14.8 23.5 20.8 25.5 26.2 19.6
Chr15 25.3 24.2 15.2 11.4 12.5 8.7 21.5 29.6 23.7
Chr16 3.3 5.5 3.0 2.4 3.1 2.6 2.9 4.1 2.6
Chr17 29.7 18.7 12.6 15.1 22.6 14.8 21.8 21.3 22.4
Chr18 19.2 19.8 13.3 15.6 17.7 17.4 20.5 15.5 15.7
Chr19 33.3 25.7 13.1 15.9 20.4 18.4 26.2 18.7 19.0
Chr20 24.7 24.6 15.9 8.8 16.3 14.0 26.2 22.8 18.1
Chr21 27.9 24.1 11.1 14.5 16.6 13.0 18.4 18.0 25.6
Chr22 10.5 9.7 6.9 7.5 11.5 9.0 16.4 17.2 15.9
Chr23 28.3 18.1 14.3 16.2 22.7 17.4 22.3 22.0 21.9
Chr24 20.5 16.6 11.2 14.2 19.6 16.1 19.2 23.2 17.5
Chr25 13.2 10.0 9.2 5.8 8.7 8.9 18.1 14.7 14.5
Chr26 18.8 15.6 12.7 9.4 18.5 12.2 24.5 14.9 16.5
Chr27 21.7 22.1 17.0 15.1 19.6 9.8 18.6 21.3 20.0
Chr28 19.3 14.8 13.4 12.0 20.1 15.0 22.7 16.0 17.4
Average (Chr1–5) 81.52 62.2 41.56 46.3 75.04 55.28 70.28 55.36 73.74
Average (Chr6–10) 32.28 29.14 18.02 19.98 31.38 24.32 34.14 27.64 30.5
Average (Chr11–28) 22.59 18.96 13.51 12.87 18.39 14.13 21.07 20.09 18.86
Average (all) 34.85 28.50 19.33 20.11 30.83 23.30 32.19 27.74 30.74