Table 1 Informations on the sequenced strains used in this study
Identifier | Species/Pathovar | Strain | Host of isolation | Country and date of isolation | Contigs | Total size (bp) | GC% | Accession number | Reference |
|---|---|---|---|---|---|---|---|---|---|
stenma5513 | Stenotrophomonas maltophilia | R551-3 | Populus trichocarpa | na | 1 | 4,573,969 | 66.29 | GCA_000020665.1 | Taghavi et al., 2008 [21] |
albiliPC73 | X. albilineans | GPE PC73 | Saccharum spp. cv. H63-1418. | Guadeloupe (France), 2003 | 1 | 3,768,695 | 62.97 | GCA_000087965.1 | Pieretti et al., 2009 [77] |
aberra6865 | X. campestris pv. campestris | CFBP6865 | Brassica oleracea var. capitata. | Australia, 1975 | 4 | 5,169,518 | 64.93 | Unpublished | Noël, comm. pers |
barbar5825 | X. campestris pv. barbareae | CFBP5825R | Barbarea vulgaris | USA, 1939 | 2 | 5,055,186 | 65.09 | ATNQ00000000 | Roux et al., 2015 [78] |
campes8004 | X. campestris pv. campestris | 8004 | Brassica oleracea var. botrytis. | United Kingdom, 1958 | 1 | 5,148,708 | 64.95 | GCA_000012105.1 | Qian et al., 2005 [79] |
campesAT33 | X. campestris pv. campestris | ATCC 33913 | Brassica oleracea var. gemmifera | United Kingdom, 1957 | 1 | 5,076,188 | 65.06 | GCA_000007145.1 | da Silva et al., 2002 [80] |
campesB100 | X. campestris pv. campestris | B100 | na | na | 1 | 5,079,002 | 65.04 | GCA_000070605.1 | Vorhölter et al., 2008 [81] |
incana2527 | X. campestris pv. incanae | CFBP2527R | Matthiola incana | USA, 1950 | 1 | 4,926,205 | 65.12 | ATNO00000000 | Roux et al., 2015 [78] |
incana1606 | X. campestris pv. incanae | CFBP1606R | Matthiola incana | France, 1974 | 1 | 4,967,651 | 65.17 | ATNN00000000 | Roux et al., 2015 [78] |
musace4381 | X. campestris pv. musacearum | NCPPB4381 | Musa sp. | Uganda, 2005 | 115 | 4,810,038 | 61.96 | ACHT00000000 | Studholme et al., 2010 [82] |
raphan5828 | X. campestris pv. raphani | CFBP5828R | Raphanus sativus | USA, na | 2 | 4,912,709 | 65.35 | ATNP00000000 | Roux et al., 2015 [78] |
raphan756C | X. campestris pv. raphani | 756C | Brassica oleracea var. capitata | east asia, na | 1 | 4,941,214 | 65.28 | GCA_000221965.1 | Bogdanove et al., 2011 [83] |
cassav4642 | X. cassavae | CFBP4642 | Manihot esculenta | Malawi, 1951 | 7 | 5,278,192 | 65.22 | GCA_000454545.1 | Bolot et al., 2013 [84] |
axanac2913 | X. citri pv. anacardii | CFBP2913 | Mangifera indica | Brazil, na | 1 | 5,203,496 | 64.57 | CP024057 | this study |
axaura1035 | X. citri pv. aurantifolii | ICPB10535 | Citrus aurantiifolia | Brazil, na | 351 | 5,060,896 | 64.81 | ACPY00000000 | Moreira et al., 2010 [85] |
axcitr1083 | X. citri pv. citri | FDC1083 | Citrus reticulata | Brazil, 1980 | 1 | 5,218,314 | 64.72 | CCVZ01000000 | Gordon et al., 2015 [86] |
axcitrJ902 | X. citri pv. citri | JF90-2 | Citrus aurantiifolia | Oman, 1986 | 1 | 5,251,225 | 64.66 | CCWA01000000 | Gordon et al., 2015 [86] |
axcitrJ238 | X. citri pv. citri | JJ238-24 | Citrus aurantiifolia | Thailand, 1989 | 1 | 5,282,622 | 64.78 | CCVX01000000 | Gordon et al., 2015 [86] |
axcitrLC80 | X. citri pv. citri | LC80 | Citrus reticulata x C. sinensis | Mali, 2006 | 1 | 5,229,127 | 64.7 | CCWJ01000000 | Gordon et al., 2015 [86] |
axcitrLE20 | X. citri pv. citri | LE20-1 | Citrus aurantiifolia | Ethiopia, 2008 | 1 | 5,309,240 | 64.71 | CCWK01000000 | Gordon et al., 2015 [86] |
axcitr9322 | X. citri pv. citri | LMG9322 | Citrus aurantiifolia | Florida, 1986 | 1 | 5,194,131 | 64.75 | CCVY01000000 | Gordon et al., 2015 [86] |
axcitri306 | X. citri pv. citri | 306 | na | na | 1 | 5,175,554 | 64.77 | GCA_000007165.1 | da Silva et al., 2002 [80] |
phafus1815 | X. citri pv. fuscans (fuscans) | CFBP1815 | Phaseolus sp | Greece, 1978 | 1 | 4,957,446 | 64.82 | GCA_900234415 | this study |
phafus4834 | X. citri pv. fuscans (fuscans) | 4834-R | Phaseolus vulgaris cv. Michelet | France, 1998 | 1 | 4,981,995 | 64.81 | FO681494 | Darrasse et al., 2013 [26] |
phafus6166 | X. citri pv. fuscans (fuscans) | CFBP6166 | Phaseolus vulgaris | South Africa, 1963 | 1 | 4,987,587 | 64.8 | GCA_900234455 | this study |
phafus6960 | X. citri pv. fuscans (fuscans) | CFBP6960 | Phaseolus vulgaris | Reunion island, France, 2000 | 1 | 4,992,131 | 64.79 | GCA_900234515 | this study |
phafus6970 | X. citri pv. fuscans (fuscans) | CFBP6970 | Phaseolus sp | USA, 1990 | 1 | 5,006,656 | 64.9 | GCA_900234505 | this study |
pha2GL6988 | X. citri pv. fuscans (NF2) | CFBP6988 | Phaseolus vulgaris cv. marla | Reunion island, France, 2000 | 1 | 5,132,433 | 64.64 | Deposited | this study |
pha2GL6990 | X. citri pv. fuscans (NF2) | CFBP6990 | Phaseolus vulgaris cv. marla | Reunion island, France, 2000 | 1 | 5,124,653 | 64.63 | GCA_900234485 | this study |
pha2GL6991 | X. citri pv. fuscans (NF2) | CFBP6991 | Phaseolus vulgaris cv. marla | Reunion island, France, 2000 | 1 | 5,342,565 | 64.35 | GCA_900234525 | this study |
pha3GL6992 | X. citri pv. fuscans (NF3) | CFBP6992 | Phaseolus vulgaris cv. marla | Reunion island, France, 2000 | 1 | 5,517,999 | 64.48 | GCA_900234495 | this study |
pha3GL6994 | X. citri pv. fuscans (NF3) | CFBP6994 | Phaseolus vulgaris | Tanzania, 1990 | 1 | 5,250,266 | 64.57 | GCA_900234565 | this study |
pha3GL6996 | X. citri pv. fuscans (NF3) | CFBP6996 | Phaseolus vulgaris cv. marla | Reunion island, France, 2000 | 4 | 5,095,420 | 64.72 | AVET00000000 | this study |
phafus7766 | X. citri pv. fuscans (fuscans) | CFBP7766 | Phaseolus vulgaris | Cameroon, 2009 | 1 | 5,185,891 | 64.63 | GCA_900234475 | this study |
phafus7767 | X. citri pv. fuscans (fuscans) | CFBP7767 | Phaseolus vulgaris | Cameroon, 2009 | 1 | 5,107,388 | 64.7 | GCA_900234465 | this study |
axglyc2526 | X. citri pv. glycines | CFBP2526 | Glycine hispida | Sudan, 1956 | 4 | 5,255,152 | 64.63 | GCA_000495275.1 | Darrasse et al., 2013 [26] |
axglyc7119 | X. citri pv. glycines | CFBP7119 | Glycine max | Brazil, 1981 | 4 | 5,521,783 | 64.39 | GCA_000488895.1 | Darrasse et al., 2013 [26] |
axmalv1386 | X. citri pv. malvacearum | GSPB1386 | na | na | 127 | 4,991,411 | 64.7 | GCA_000309905.1 | Hainan University |
axmalv2388 | X. citri pv. malvacearum | GSPB2388 | na | na | 61 | 5,127,016 | 64.53 | GCA_000309925.1 | Hainan University |
axmalvaX18 | X. citri pv. malvacearum | X18 | Gossypium spp. | Burkina Faso, 1980s | 4 | 4,993,692 | 64.7 | ATMA00000000 | Cunnac et al., 2013 [87] |
axmalvaX20 | X. citri pv. malvacearum | X20 | Gossypium spp. | Burkina Faso, 1980s | 4 | 5,219,648 | 64.49 | ATMB00000000 | Cunnac et al., 2013 [87] |
axmang5610 | X. citri pv. mangiferaeindicae | LG56-10 | Mangifera indica | na | 4 | 5,281,952 | 64.56 | PEBY00000000 | this study |
axmang8127 | X. citri pv. mangiferaeindicae | LG81-27 | Mangifera indica | na | 6 | 5,209,594 | 64.68 | PEBZ00000000 | this study |
axmangL941 | X. citri pv. mangiferaeindicae | LMG941 | Mangifera indica | India, 1957 | 195 | 5,144,323 | 64.84 | CAHO01000001 | Midha et al., 2012 [88] |
axalfa3836 | X. euvesicatoria pv. alfalfae | CFBP3836 | Medicago sativa | Sudan, na | 6 | 5,081,438 | 64.74 | GCA_000488955.1 | |
axalli6369 | X. euvesicatoria pv. allii | CFBP6369 | Allium cepa | Reunion island, France, 1996 | 3 | 5,427,488 | 64.36 | GCA_000730305.1 | Gagnevin et al., 2014 [89] |
axmeloniF1 | X. euvesicatoria pv. citrumelonis | F1 | Citrus sp. | FL, USA, 1984 | 1 | 4,967,469 | 64.91 | GCA_000225915.1 | Jalan et al., 2011 [90] |
axeuve8510 | X. euvesicatoria pv. euvesicatoria | 85-10 | Capsicum annuum | FL, USA, 1985 | 1 | 5,178,466 | 64.74 | GCA_000009165.1 | Thieme et al., 2005 [91] |
perfor9118 | X. euvesicatoria pv. perforans | 91-118 | Lycopersicon esculentum | FL, USA, na | 291 | 5,296,241 | 65.04 | AEQW00000000 | Potnis et al., 2011 [92] |
gardne1965 | X. gardneri | ATCC19865 | Lycopersicon esculentum | Yugoslavia, 1953 | 552 | 5,594,687 | 63.68 | AEQX00000000 | Potnis et al., 2011 [92] |
carotaM081 | X. hortorum pv. carotae | M081 | Daucus carota | OR, USA, na | 154 | 5,039,269 | 63.83 | GCA_000505565.1 | Kimbrel et al., 2011 [93] |
oryzaeKA10 | X. oryzae pv. oryzae | KACC10331 | Oryza sativa | Korea, na | 1 | 4,941,439 | 63.69 | GCA_000007385.1 | Lee et al., 2005 [94] |
oryzaeMA31 | X. oryzae pv. oryzae | MAFF 311018 | Oryza sativa | Japan, na | 1 | 4,940,217 | 63.7 | GCA_000010025.1 | unpublished |
oryzaePX99 | X. oryzae pv. oryzae | PXO99A | Oryza sativa | Philippines, na | 1 | 5,240,075 | 63.63 | GCA_000019585.1 | Salzberg et al., 2008 [95] |
oryzicBA15 | X. oryzae pv. oryzicola | BAI15 | Oryza sativa | Burkina Faso, 2009 | 1 | 4,315,327 | 64.16 | GCA_002189395.1 | this study |
oryzicBA20 | X. oryzae pv. oryzicola | BAI20 | Oryza sativa | Burkina Faso, 2009 | 1 | 4,498,643 | 64.05 | GCA_002189435.1 | this study |
oryzicBA21 | X. oryzae pv. oryzicola | BAI21 | Oryza sativa | Burkina Faso, 2009 | 1 | 4,419,870 | 64.07 | GCA_002189465.1 | this study |
oryzicB256 | X. oryzae pv. oryzicola | BLS256 | Oryza sativa | Philippines, 1984 | 1 | 4,831,739 | 64.05 | AAQN01000001 | Bogdanove et al., 2011 [83] |
axdieff695 | X. phaseoli pv. dieffenbachiae | LMG695 | Anthurium andreanum | Brazil, 1965 | 1 | 5,037,357 | 64.88 | GCA_001564415.1 | Robène et al., 2016 [96] |
axmaniC151 | X. phaseoli pv. manihotis | CIO151 | Manihot sp. | Colombia, na | 36 | 5,154,532 | 64.7 | GCA_000265845.1 | Rodriguez et al., 2012 [97] |
pha1GLC412 | X. phaseoli pv. phaseoli (NF1) | CFBP412 | Phaseolus vulgaris | USA, na | 1 | 5,028,351 | 64.94 | GCA_900234435 | this study |
pha1GL6164 | X. phaseoli pv. phaseoli (NF1) | CFBP6164 | Phaseolus vulgaris | Romania, 1996 | 1 | 5,319,061 | 64.64 | GCA_900234535 | this study |
pha1GL6546 | X. phaseoli pv. phaseoli (NF1) | CFBP6546 | Phaseolus vulgaris | USA, na | 4 | 4,994,665 | 64.92 | Deposited | this study |
pha1GL6984 | X. phaseoli pv. phaseoli (NF1) | CFBP6984 | Phaseolus vulgaris | Reunion island, France, 2000 | 1 | 5,106,663 | 64.82 | GCA_900234425 | this study |
pha1GL7430 | X. phaseoli pv. phaseoli (NF1) | CFBP7430 | Phaseolus vulgaris cv. CFO16 | Iran, 2006 | 1 | 5,085,978 | 64.89 | GCA_900234445 | this study |
axsyng9055 | X. phaseoli pv. syngonii (NF1) | LMG9055 | Syngonium podophyllum | na | 6 | 5,010,905 | 64.82 | GCA_001640215.1 | Robène et al., 2016 [96] |
saccha4393 | X. sacchari | NCPPB4393 | Musa sp. | Tanzania, 2007 | 470 | 4,955,099 | 69.03 | AGDB00000000 | Studholme et al., 2011 [98] |
cereal2541 | X. translucens pv. cerealis | CFBP2541 | Bromus inermis | USA, 1941 | 10 | 4,524,870 | 67.37 | GCA_000807145.1 | Pesce et al., 2015a [99] |
trgramXt29 | X. translucens pv. graminis | ART-Xtg29 | Lolium multiflorum | Switzerland, na | 788 | 4,203,855 | 68.58 | ANGG00000000 | Wichman et al., 2013 [101] |
gramin2053 | X. translucens pv. graminis | CFPB2053 | Dactylis glomerata | Switzerland, 1973 | 2 | 4,344,936 | 68.33 | LHSI00000000 | Pesce et al., 2015b [100] |
trtran1874 | X. translucens pv. translucens | DSM18974 | Hordeum vulgare | USA, 1958 | 551 | 4,550,921 | 67.67 | GCA_000331775.1 | unpublished |
vasculN702 | X. vasicola pv. vasculorum | NCPPB702 | Saccharum officinarum | Zimbabwe, 1959 | 97 | 5,491,457 | 56.86 | ACHS00000000 | Studholme et al., 2010 [82] |
vesica3537 | X. vesicatoria | ATCC35937 | Lycopersicon esculentum | New Zealand, 1955 | 296 | 5,567,561 | 64.06 | AEQV01000000 | Potnis et al., 2011 [92] |
xylefaTem1 | Xylella fastidiosa subsp. fastidiosa | Temecula1 | Vitis vinifera | USA, na | 1 | 2,519,802 | 51.77 | GCA_000007245.1 | van Sluys et al., 2003 [102] |
xylefa9a5c | Xylella fastidiosa subsp. pauca | 9a5c | Citrus sinensis cv. Valencia | Brazil, 1992 | 1 | 2,679,306 | 52.67 | GCA_000006725.1 | Simpson et al., 2000 [19] |