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Table 1 Informations on the sequenced strains used in this study

From: Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

Identifier Species/Pathovar Strain Host of isolation Country and date of isolation Contigs Total size (bp) GC% Accession number Reference
stenma5513 Stenotrophomonas maltophilia R551-3 Populus trichocarpa na 1 4,573,969 66.29 GCA_000020665.1 Taghavi et al., 2008 [21]
albiliPC73 X. albilineans GPE PC73 Saccharum spp. cv. H63-1418. Guadeloupe (France), 2003 1 3,768,695 62.97 GCA_000087965.1 Pieretti et al., 2009 [77]
aberra6865 X. campestris pv. campestris CFBP6865 Brassica oleracea var. capitata. Australia, 1975 4 5,169,518 64.93 Unpublished Noël, comm. pers
barbar5825 X. campestris pv. barbareae CFBP5825R Barbarea vulgaris USA, 1939 2 5,055,186 65.09 ATNQ00000000 Roux et al., 2015 [78]
campes8004 X. campestris pv. campestris 8004 Brassica oleracea var. botrytis. United Kingdom, 1958 1 5,148,708 64.95 GCA_000012105.1 Qian et al., 2005 [79]
campesAT33 X. campestris pv. campestris ATCC 33913 Brassica oleracea var. gemmifera United Kingdom, 1957 1 5,076,188 65.06 GCA_000007145.1 da Silva et al., 2002 [80]
campesB100 X. campestris pv. campestris B100 na na 1 5,079,002 65.04 GCA_000070605.1 Vorhölter et al., 2008 [81]
incana2527 X. campestris pv. incanae CFBP2527R Matthiola incana USA, 1950 1 4,926,205 65.12 ATNO00000000 Roux et al., 2015 [78]
incana1606 X. campestris pv. incanae CFBP1606R Matthiola incana France, 1974 1 4,967,651 65.17 ATNN00000000 Roux et al., 2015 [78]
musace4381 X. campestris pv. musacearum NCPPB4381 Musa sp. Uganda, 2005 115 4,810,038 61.96 ACHT00000000 Studholme et al., 2010 [82]
raphan5828 X. campestris pv. raphani CFBP5828R Raphanus sativus USA, na 2 4,912,709 65.35 ATNP00000000 Roux et al., 2015 [78]
raphan756C X. campestris pv. raphani 756C Brassica oleracea var. capitata east asia, na 1 4,941,214 65.28 GCA_000221965.1 Bogdanove et al., 2011 [83]
cassav4642 X. cassavae CFBP4642 Manihot esculenta Malawi, 1951 7 5,278,192 65.22 GCA_000454545.1 Bolot et al., 2013 [84]
axanac2913 X. citri pv. anacardii CFBP2913 Mangifera indica Brazil, na 1 5,203,496 64.57 CP024057 this study
axaura1035 X. citri pv. aurantifolii ICPB10535 Citrus aurantiifolia Brazil, na 351 5,060,896 64.81 ACPY00000000 Moreira et al., 2010 [85]
axcitr1083 X. citri pv. citri FDC1083 Citrus reticulata Brazil, 1980 1 5,218,314 64.72 CCVZ01000000 Gordon et al., 2015 [86]
axcitrJ902 X. citri pv. citri JF90-2 Citrus aurantiifolia Oman, 1986 1 5,251,225 64.66 CCWA01000000 Gordon et al., 2015 [86]
axcitrJ238 X. citri pv. citri JJ238-24 Citrus aurantiifolia Thailand, 1989 1 5,282,622 64.78 CCVX01000000 Gordon et al., 2015 [86]
axcitrLC80 X. citri pv. citri LC80 Citrus reticulata x C. sinensis Mali, 2006 1 5,229,127 64.7 CCWJ01000000 Gordon et al., 2015 [86]
axcitrLE20 X. citri pv. citri LE20-1 Citrus aurantiifolia Ethiopia, 2008 1 5,309,240 64.71 CCWK01000000 Gordon et al., 2015 [86]
axcitr9322 X. citri pv. citri LMG9322 Citrus aurantiifolia Florida, 1986 1 5,194,131 64.75 CCVY01000000 Gordon et al., 2015 [86]
axcitri306 X. citri pv. citri 306 na na 1 5,175,554 64.77 GCA_000007165.1 da Silva et al., 2002 [80]
phafus1815 X. citri pv. fuscans (fuscans) CFBP1815 Phaseolus sp Greece, 1978 1 4,957,446 64.82 GCA_900234415 this study
phafus4834 X. citri pv. fuscans (fuscans) 4834-R Phaseolus vulgaris cv. Michelet France, 1998 1 4,981,995 64.81 FO681494 Darrasse et al., 2013 [26]
phafus6166 X. citri pv. fuscans (fuscans) CFBP6166 Phaseolus vulgaris South Africa, 1963 1 4,987,587 64.8 GCA_900234455 this study
phafus6960 X. citri pv. fuscans (fuscans) CFBP6960 Phaseolus vulgaris Reunion island, France, 2000 1 4,992,131 64.79 GCA_900234515 this study
phafus6970 X. citri pv. fuscans (fuscans) CFBP6970 Phaseolus sp USA, 1990 1 5,006,656 64.9 GCA_900234505 this study
pha2GL6988 X. citri pv. fuscans (NF2) CFBP6988 Phaseolus vulgaris cv. marla Reunion island, France, 2000 1 5,132,433 64.64 Deposited this study
pha2GL6990 X. citri pv. fuscans (NF2) CFBP6990 Phaseolus vulgaris cv. marla Reunion island, France, 2000 1 5,124,653 64.63 GCA_900234485 this study
pha2GL6991 X. citri pv. fuscans (NF2) CFBP6991 Phaseolus vulgaris cv. marla Reunion island, France, 2000 1 5,342,565 64.35 GCA_900234525 this study
pha3GL6992 X. citri pv. fuscans (NF3) CFBP6992 Phaseolus vulgaris cv. marla Reunion island, France, 2000 1 5,517,999 64.48 GCA_900234495 this study
pha3GL6994 X. citri pv. fuscans (NF3) CFBP6994 Phaseolus vulgaris Tanzania, 1990 1 5,250,266 64.57 GCA_900234565 this study
pha3GL6996 X. citri pv. fuscans (NF3) CFBP6996 Phaseolus vulgaris cv. marla Reunion island, France, 2000 4 5,095,420 64.72 AVET00000000 this study
phafus7766 X. citri pv. fuscans (fuscans) CFBP7766 Phaseolus vulgaris Cameroon, 2009 1 5,185,891 64.63 GCA_900234475 this study
phafus7767 X. citri pv. fuscans (fuscans) CFBP7767 Phaseolus vulgaris Cameroon, 2009 1 5,107,388 64.7 GCA_900234465 this study
axglyc2526 X. citri pv. glycines CFBP2526 Glycine hispida Sudan, 1956 4 5,255,152 64.63 GCA_000495275.1 Darrasse et al., 2013 [26]
axglyc7119 X. citri pv. glycines CFBP7119 Glycine max Brazil, 1981 4 5,521,783 64.39 GCA_000488895.1 Darrasse et al., 2013 [26]
axmalv1386 X. citri pv. malvacearum GSPB1386 na na 127 4,991,411 64.7 GCA_000309905.1 Hainan University
axmalv2388 X. citri pv. malvacearum GSPB2388 na na 61 5,127,016 64.53 GCA_000309925.1 Hainan University
axmalvaX18 X. citri pv. malvacearum X18 Gossypium spp. Burkina Faso, 1980s 4 4,993,692 64.7 ATMA00000000 Cunnac et al., 2013 [87]
axmalvaX20 X. citri pv. malvacearum X20 Gossypium spp. Burkina Faso, 1980s 4 5,219,648 64.49 ATMB00000000 Cunnac et al., 2013 [87]
axmang5610 X. citri pv. mangiferaeindicae LG56-10 Mangifera indica na 4 5,281,952 64.56 PEBY00000000 this study
axmang8127 X. citri pv. mangiferaeindicae LG81-27 Mangifera indica na 6 5,209,594 64.68 PEBZ00000000 this study
axmangL941 X. citri pv. mangiferaeindicae LMG941 Mangifera indica India, 1957 195 5,144,323 64.84 CAHO01000001 Midha et al., 2012 [88]
axalfa3836 X. euvesicatoria pv. alfalfae CFBP3836 Medicago sativa Sudan, na 6 5,081,438 64.74 GCA_000488955.1 Jacques et al., 2013 [3, 22]
axalli6369 X. euvesicatoria pv. allii CFBP6369 Allium cepa Reunion island, France, 1996 3 5,427,488 64.36 GCA_000730305.1 Gagnevin et al., 2014 [89]
axmeloniF1 X. euvesicatoria pv. citrumelonis F1 Citrus sp. FL, USA, 1984 1 4,967,469 64.91 GCA_000225915.1 Jalan et al., 2011 [90]
axeuve8510 X. euvesicatoria pv. euvesicatoria 85-10 Capsicum annuum FL, USA, 1985 1 5,178,466 64.74 GCA_000009165.1 Thieme et al., 2005 [91]
perfor9118 X. euvesicatoria pv. perforans 91-118 Lycopersicon esculentum FL, USA, na 291 5,296,241 65.04 AEQW00000000 Potnis et al., 2011 [92]
gardne1965 X. gardneri ATCC19865 Lycopersicon esculentum Yugoslavia, 1953 552 5,594,687 63.68 AEQX00000000 Potnis et al., 2011 [92]
carotaM081 X. hortorum pv. carotae M081 Daucus carota OR, USA, na 154 5,039,269 63.83 GCA_000505565.1 Kimbrel et al., 2011 [93]
oryzaeKA10 X. oryzae pv. oryzae KACC10331 Oryza sativa Korea, na 1 4,941,439 63.69 GCA_000007385.1 Lee et al., 2005 [94]
oryzaeMA31 X. oryzae pv. oryzae MAFF 311018 Oryza sativa Japan, na 1 4,940,217 63.7 GCA_000010025.1 unpublished
oryzaePX99 X. oryzae pv. oryzae PXO99A Oryza sativa Philippines, na 1 5,240,075 63.63 GCA_000019585.1 Salzberg et al., 2008 [95]
oryzicBA15 X. oryzae pv. oryzicola BAI15 Oryza sativa Burkina Faso, 2009 1 4,315,327 64.16 GCA_002189395.1 this study
oryzicBA20 X. oryzae pv. oryzicola BAI20 Oryza sativa Burkina Faso, 2009 1 4,498,643 64.05 GCA_002189435.1 this study
oryzicBA21 X. oryzae pv. oryzicola BAI21 Oryza sativa Burkina Faso, 2009 1 4,419,870 64.07 GCA_002189465.1 this study
oryzicB256 X. oryzae pv. oryzicola BLS256 Oryza sativa Philippines, 1984 1 4,831,739 64.05 AAQN01000001 Bogdanove et al., 2011 [83]
axdieff695 X. phaseoli pv. dieffenbachiae LMG695 Anthurium andreanum Brazil, 1965 1 5,037,357 64.88 GCA_001564415.1 Robène et al., 2016 [96]
axmaniC151 X. phaseoli pv. manihotis CIO151 Manihot sp. Colombia, na 36 5,154,532 64.7 GCA_000265845.1 Rodriguez et al., 2012 [97]
pha1GLC412 X. phaseoli pv. phaseoli (NF1) CFBP412 Phaseolus vulgaris USA, na 1 5,028,351 64.94 GCA_900234435 this study
pha1GL6164 X. phaseoli pv. phaseoli (NF1) CFBP6164 Phaseolus vulgaris Romania, 1996 1 5,319,061 64.64 GCA_900234535 this study
pha1GL6546 X. phaseoli pv. phaseoli (NF1) CFBP6546 Phaseolus vulgaris USA, na 4 4,994,665 64.92 Deposited this study
pha1GL6984 X. phaseoli pv. phaseoli (NF1) CFBP6984 Phaseolus vulgaris Reunion island, France, 2000 1 5,106,663 64.82 GCA_900234425 this study
pha1GL7430 X. phaseoli pv. phaseoli (NF1) CFBP7430 Phaseolus vulgaris cv. CFO16 Iran, 2006 1 5,085,978 64.89 GCA_900234445 this study
axsyng9055 X. phaseoli pv. syngonii (NF1) LMG9055 Syngonium podophyllum na 6 5,010,905 64.82 GCA_001640215.1 Robène et al., 2016 [96]
saccha4393 X. sacchari NCPPB4393 Musa sp. Tanzania, 2007 470 4,955,099 69.03 AGDB00000000 Studholme et al., 2011 [98]
cereal2541 X. translucens pv. cerealis CFBP2541 Bromus inermis USA, 1941 10 4,524,870 67.37 GCA_000807145.1 Pesce et al., 2015a [99]
trgramXt29 X. translucens pv. graminis ART-Xtg29 Lolium multiflorum Switzerland, na 788 4,203,855 68.58 ANGG00000000 Wichman et al., 2013 [101]
gramin2053 X. translucens pv. graminis CFPB2053 Dactylis glomerata Switzerland, 1973 2 4,344,936 68.33 LHSI00000000 Pesce et al., 2015b [100]
trtran1874 X. translucens pv. translucens DSM18974 Hordeum vulgare USA, 1958 551 4,550,921 67.67 GCA_000331775.1 unpublished
vasculN702 X. vasicola pv. vasculorum NCPPB702 Saccharum officinarum Zimbabwe, 1959 97 5,491,457 56.86 ACHS00000000 Studholme et al., 2010 [82]
vesica3537 X. vesicatoria ATCC35937 Lycopersicon esculentum New Zealand, 1955 296 5,567,561 64.06 AEQV01000000 Potnis et al., 2011 [92]
xylefaTem1 Xylella fastidiosa subsp. fastidiosa Temecula1 Vitis vinifera USA, na 1 2,519,802 51.77 GCA_000007245.1 van Sluys et al., 2003 [102]
xylefa9a5c Xylella fastidiosa subsp. pauca 9a5c Citrus sinensis cv. Valencia Brazil, 1992 1 2,679,306 52.67 GCA_000006725.1 Simpson et al., 2000 [19]
  1. na not available