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Table 4 RM systems identified in S. lugdunensis using the REBASE database, and homology analysis of methylase

From: Comparative genomic analysis of Staphylococcus lugdunensis shows a closed pan-genome and multiple barriers to horizontal gene transfer

S. lugdunensis

RM System

Closest Methylase

ID1

ID score

REBASE score

Strain origin

Nucleotide specificity

HKU0901

Type I

M.SauC18

98%

1127

S. aureus C18

Unknown

N920143

Type I

M.SauC18

91%

1128

S. aureus C18

Unknown

FDAARGOS_141

None

     

FDAARGOS_143

Type I

M.SauC18

90%

1121

S. aureus C18

Unknown

Type I

Sca9557

97%

1170

S. caprae 9557

Unknown

FDAARGOS_222

Type II

M.ShaJ

82%

844

S. haemolyticus JCSJ1435

GATC

VISLISI_22

Type II

M.ShaJ

82%

844

S. haemolyticus JCSJ1435

GATC

VISLISI_25

Type II

Methylase 1

 

M2.Sep60

66%

329

S. epidermidis BCM-HMP0060

GGTGA

Methylase 2

 

M1.Sep60

66%

558

S. epidermidis BCM-HMP0060

GGTGA

VISLISI_27

Type I

M.SauC18

91%

1128

S. aureus C18

Unknown

Type I

M.SauMSSIII

94%

1346

S. aureus MSSA476

TAAYNNNNNNNTCNNC

VISLISI_33

Type I

M.SauC18

91%

1128

S. aureus C18

Unknown

VISLISI_37

Type I

M.SauC18

91%

1128

S. aureus C18

Unknown

C33 pVISLISI_5

Type II

M.EfaPC41

60%

312

E. faecium PC4.1

Unknown

  1. 1 Identity