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Table 1 The eight hub genes in the MEhoneydew module. RPKM indicates the log2 value of the expression ratio (inoculated/mock-inoculated). R: IL10–1, S: CC3

From: Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

Gene ID RPKM Edges IPR-Description
Rt1/Rck Rt3/Rck St1/Sck St3/Sck
Csa6G410090 20.49 58.54 3.72 11.57 85 IPR003612 Plant lipid transfer protein
Csa5G148510 7.92 25.57 2.23 7.89 84 IPR000073 Alpha/beta hydrolase fold-1
Csa1G597800 4.67 7.94 1.82 5.48 83 IPR001296 Glycosyl transferase group 1
Csa6G013920 51.77 100.73 6.38 23.79 71 IPR007667 Hypoxia induced protein domain
Csa6G095910 2.82 5.33 3.65 6.46 68 IPR017930 HTH transcriptional regulator Myb-type DNA-binding
Csa2G302130 1.79 2.63 1.10 1.92 51 IPR006501 Pectinesterase inhibitor
Csa3G760500 4.27 8.90 1.17 4.37 50 IPR013770 Plant lipid transfer protein
Csa2G009620 17.49 27.53 3.28 10.21 49 IPR005123 Oxoglutarate/iron-dependent oxygenase