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Table 1 The eight hub genes in the MEhoneydew module. RPKM indicates the log2 value of the expression ratio (inoculated/mock-inoculated). R: IL10–1, S: CC3

From: Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

Gene ID

RPKM

Edges

IPR-Description

Rt1/Rck

Rt3/Rck

St1/Sck

St3/Sck

Csa6G410090

20.49

58.54

3.72

11.57

85

IPR003612 Plant lipid transfer protein

Csa5G148510

7.92

25.57

2.23

7.89

84

IPR000073 Alpha/beta hydrolase fold-1

Csa1G597800

4.67

7.94

1.82

5.48

83

IPR001296 Glycosyl transferase group 1

Csa6G013920

51.77

100.73

6.38

23.79

71

IPR007667 Hypoxia induced protein domain

Csa6G095910

2.82

5.33

3.65

6.46

68

IPR017930 HTH transcriptional regulator Myb-type DNA-binding

Csa2G302130

1.79

2.63

1.10

1.92

51

IPR006501 Pectinesterase inhibitor

Csa3G760500

4.27

8.90

1.17

4.37

50

IPR013770 Plant lipid transfer protein

Csa2G009620

17.49

27.53

3.28

10.21

49

IPR005123 Oxoglutarate/iron-dependent oxygenase