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Table 4 List of 83 divergent SNPs with their functions obtained by outlier tests as putative markers and used for their association with environmental variables using Samβada package

From: Population genomics and morphometric assignment of western honey bees (Apis mellifera L.) in the Republic of South Africa

SNPID SNP Position Gene product Gene ID (BEEBASE) Gene ID (FLYBASE)
S1_4,550,788 4,550,788 LIM/homeobox protein Awh GB53183 FBgn0013751
S1_6,686,923 6,686,923 Uncharacterized LOC725682, transcript variant X1 GB40830 FBgn0260997
S1_12,811,137 12,811,137 Protein prickle-like, transcript variant X1 GB44796 FBgn0003090
S1_15,039,694 15,039,694 Krueppel-like factor 6, transcript variant X1 GB52133 FBgn0040765
S1_17,699,574 17,699,574 Protein-serine O-palmitoleoyltransferase porcupine GB47458 FBgn0004957
S1_18,694,215 18,694,215 Protein eva-1, transcript variant X1 GB51947 FBgn0259821
S1_33386163 3,492,655 Unknown Unknown Unknown
S1_50443612 5,000,737 Dumpy GB55781 FBgn0053196
S1_52257404 6,814,529 Unknown Unknown Unknown
S1_52257424 6,814,549 Unknown Unknown Unknown
S1_62957554 4,280,238 Sestrin homolog, transcript variant X1 GB49567 FBgn0034897
S1_69083742 10,406,426 Protein 4.1 homolog GB44175 FBgn0010434
S1_74943997 3,548,247 Hemicentin-2, transcript variant X1 GB51391 Unknown
S1_77638337 6,242,587 Solute carrier family 35 member F5, transcript variant X1 GB46790 FBgn0034032
S1_77638361 6,242,611 Solute carrier family 35 member F5, transcript variant X1 GB46790 FBgn0034032
S1_86109011 349,889 Eye-specific diacylglycerol kinase, transcript variant X1 GB51219 FBgn0261549
S1_86386875 627,753 Lateral signaling target protein 2 homolog GB51210 FBgn0039492
S1_88925416 3,166,294 Charged multivesicular body protein 7 GB54484 FBgn0027565
S1_88925462 3,166,340 UDP-glucuronosyltransferase 1–3-like GB54485 Unknown
S1_89224631 3,465,509 Jazigo, transcript variant X1 GB43054 FBgn0261259
S1_90545383 4,786,261 GRAM domain-containing protein 3-like, transcript variant X1 GB52157 Unknown
S1_96460901 10,701,779 Guanylate cyclase, soluble, beta 1 GB52953 FBgn0013973
S1_103184872 17,425,750 Potassium channel subfamily T member 2 GB45474 FBgn0261698
S1_104349915 117,756 Zinc finger protein GLI4-like, transcript variant X1 GB40273 FBgn0039039
S1_108444799 4,212,640 Protein tincar, transcript variant X1 GB49246 FBgn0261649
S1_108537914 4,305,755 Tachykinin GB49248 Unknown
S1_108537929 4,305,770 Tachykinin GB49248 Unknown
S1_108682550 4,450,391 Unknown Unknown Unknown
S1_108724951 4,492,792 Uncharacterized LOC725260 GB54634 FBgn0034808
S1_108786716 4,554,557 Uncharacterized LOC725260 GB54634 FBgn0034808
S1_110307882 6,075,723 Thyrotropin-releasing hormone-degrading ectoenzyme-like, transcript variant X1 GB43314 Unknown
S1_110854546 6,622,387 CCR4-NOT transcription complex subunit 6-like, transcript variant X1 GB48300 FBgn0011725
S1_110950229 6,718,070 CCR4-NOT transcription complex subunit 6-like, transcript variant X1 GB48300 FBgn0011725
S1_110951124 6,718,965 CCR4-NOT transcription complex subunit 6-like, transcript variant X1 GB48300 FBgn0011725
S1_110951168 6,719,009 CCR4-NOT transcription complex subunit 6-like, transcript variant X1 GB48300 FBgn0011725
S1_123838315 6,386,711 Plasma membrane calcium-transporting ATPase 2 GB43909 FBgn0259214
S1_125133095 7,681,491 Uncharacterized LOC411277, transcript variant X1 GB41894 FBgn0023531
S1_126922494 9,470,890 Probable G-protein coupled receptor 158 GB52840 FBgn0085401
S1_127479850 10,028,246 Ecdysone receptor, transcript variant A GB48059 FBgn0000546
S1_130971599 13,519,995 Uncharacterized LOC725485 GB51646 FBgn0259927
S1_132727867 1,729,619 Prefoldin subunit 5 GB43750 FBgn0038976
S1_134667854 3,669,606 Fasciclin-1 Unknown Unknown
S1_141112580 10,114,332 Sortilin-related receptor GB53341 Unknown
S1_143133972 1,015,171 Uncharacterized LOC102654435 Unknown Unknown
S1_143743719 1,624,918 Unknown Unknown Unknown
S1_150101379 7,982,578 Beta-1-syntrophin, transcript variant X1 GB54295 FBgn0037130
S1_153385191 11,266,390 Uncharacterized protein CG43867 GB51041 FBgn0259100
S1_153549815 11,431,014 Brachyury protein, transcript variant X1 GB51013 FBgn0011723
S1_153549857 11,431,056 Brachyury protein, transcript variant X1 GB51013 FBgn0011723
S1_155093443 8589 Unknown Unknown Unknown
S1_155468419 383,565 Uncharacterized protein C1orf112 homolog GB46620 FBgn0050424
S1_162084123 6,999,269 Protein FAM49B, transcript variant X1 GB53506 FBgn0052066
S1_162216249 7,131,395 tRNA dimethylallyltransferase, mitochondrial-like GB53505 Unknown
S1_164267544 9,182,690 Carbonic anhydrase-related protein 10, transcript variant X1 GB45092 FBgn0029962
S1_167336698 12,251,844 Tyrosine-protein kinase transmembrane receptor Ror2, transcript variant X1 GB45194 FBgn0020391
S1_168107630 13,022,776 Fringe glycosyltransferase GB44913 FBgn0011591
S1_176503904 6,692,394 Disks large 1 tumor suppressor protein GB40648 FBgn0001624
S1_182557882 843,618 Unknown Unknown Unknown
S1_192304686 301,823 Inactive rhomboid protein 1 GB49046 FBgn0041723
S1_193370056 1,367,193 Unknown GB53054 Unknown
S1_197495828 5,492,965 Negative elongation factor E-like, transcript variant X1 Unknown Unknown
S1_200092025 8,089,162 Chromatin assembly factor 1 subunit A-B, transcript variant X1 GB52767 FBgn0025833
S1_202452286 195,668 MAX dimerization protein Unknown Unknown
S1_209285909 7,029,291 Uncharacterized LOC100576529 GB50066 Unknown
S1_212445471 21,524 Scavenger receptor class B member 1-like, transcript variant X1 Unknown Unknown
S1_217211608 4,787,661 Unknown Unknown Unknown
S1_218446595 6,022,648 Ankyrin repeat domain-containing protein 39-like, transcript variant X1 GB45961 FBgn0031674
S1_220569872 317,721 Histone-lysine N-methyltransferase SETMAR-like Unknown Unknown
S1_226482382 27,314 Histone-lysine N-methyltransferase SETMAR-like Unknown Unknown
S1_226482388 27,320 Histone-lysine N-methyltransferase SETMAR-like Unknown Unknown
S1_227605662 117,306 Unknown Unknown Unknown
S1_228624508 85,274 Unknown Unknown Unknown
S1_228990350 24,441 Unknown Unknown Unknown
S1_229285085 47,268 Cytohesin-1-like GB55123 FBgn0086779
S1_229285093 47,276 Cytohesin-1-like GB55123 FBgn0086779
S1_229818309 42,135 Unknown Unknown Unknown
S1_231880268 35,546 Lactosylceramide 4-alpha-galactosyltransferase, transcript variant X1 GB46832 FBgn0039378
S1_231894656 49,934 Unknown Unknown Unknown
S1_231918135 9237 Putative phosphatidate phosphatase, transcript variant X1 GB49207 FBgn0016078
S1_233321962 34,497 Homogentisate 1,2-dioxygenase GB53288 FBgn0040211
S1_233858922 67,499 Zinc finger and BTB domain-containing protein 24-like GB51241 Unknown
S1_234352063 52,465 Unknown Unknown Unknown
S1_241871073 419 Unknown Unknown Unknown
  1. The Gene IDs mapped with Apis mellifera and Drosophila melanogaster genomes are listed for each SNP