Skip to main content

Table 5 The list of divergent SNP loci for Apis mellifera capensis using FST outlier and environmental correlation tests

From: Population genomics and morphometric assignment of western honey bees (Apis mellifera L.) in the Republic of South Africa

No.

SNP loci

SNP Position

Heterozygosity

FST statistic

Environmental correlation

1

S1_13,998,280

13,998,280

0.25

0.1

V1, V6, V10, V11

2

S1_14,309,089

14,309,089

0.13

0.32

 

3

S1_19,198,024

19,198,024

0.1

0.13

 

4

S1_33680990

3,787,482

0.19

0.26

 

5

S1_34025116

4,131,608

0.14

0.18

 

6

S1_38187276

8,293,768

0.24

0.11

 

7

S1_39180700

9,287,192

0.25

0.11

V15

8

S1_47120892

1,678,017

0.47

0.16

V13, V16, V19

9

S1_50443500

5,000,625

0.39

0.2

 

10

S1_52257404

6,814,529

0.46

0.21

V8, V15, V19, Longitude

11

S1_52257424

6,814,549

0.5

0.27

V15, Longitude

12

S1_58794304

116,988

0.12

0.19

 

13

S1_71833698

437,948

0.5

0.2

 

14

S1_72542859

1,147,109

0.2

0.13

 

15

S1_84555306

13,159,556

0.22

0.17

V13, V16, V19

16

S1_84555310

13,159,560

0.21

0.13

V15, Latitude

17

S1_94849186

9,090,064

0.32

0.15

 

18

S1_96460917

10,701,795

0.42

0.15

 

19

S1_100472193

14,713,071

0.29

0.13

 

20

S1_105727753

1,495,594

0.13

0.11

 

21

S1_108033805

3,801,646

0.29

0.11

 

22

S1_108684700

4,452,541

0.14

0.16

V4, V5, V7, V14, V15, V17, V18, Longitude

23

S1_108684756

4,452,597

0.15

0.16

V4, V5, V7, V14, V15, V17, V18, Longitude

24

S1_108786716

4,554,557

0.45

0.42

V9

25

S1_109332327

5,100,168

0.21

0.25

V3, V4, V5, V7,V14, V15, V17, V18, Longitude

26

S1_110951124

6,718,965

0.18

0.28

V4, V5, V7, V14, V17, V18, Longitude

27

S1_110951168

6,719,009

0.18

0.28

V4, V5, V7, V14, V17, V18, Longitude

28

S1_110951197

6,719,038

0.19

0.27

V3, V4, V5, V7, V14, V15, V17, V18, Longitude

29

S1_111171339

6,939,180

0.18

0.24

V3, V4, V5, V7, V14, V15, V17, V18, Longitude

30

S1_111171425

6,939,266

0.18

0.24

V3, V4, V5, V7, V14, V15, V17, V18, Longitude

31

S1_111285658

7,053,499

0.18

0.23

V4, V14, V15, V17, V18, Longitude

32

S1_118855642

1,404,038

0.48

0.14

 

33

S1_120132551

2,680,947

0.2

0.13

Longitude

34

S1_132727867

1,729,619

0.2

0.25

V3, V9, Longitude

35

S1_132761070

1,762,822

0.5

0.38

V3, V9, Longitude

36

S1_133026966

2,028,718

0.23

0.18

Longitude

37

S1_146906109

4,787,308

0.16

0.21

 

38

S1_152157525

10,038,724

0.43

0.14

 

39

S1_158767923

3,683,069

0.44

0.11

 

40

S1_177861915

8,050,405

0.2

0.2

V1, V5, V8, V10

41

S1_192304686

301,823

0.16

0.36

V8

42

S1_207842400

5,585,782

0.07

0.13

 

43

S1_210484669

8,228,051

0.3

0.1

 

44

S1_212486639

62,692

0.5

0.17

Longitude

45

S1_238491065

11,486

0.16

0.15

 

46

S1_238491098

11,519

0.36

0.15

V13, V15, V16, V19

47

S1_238498932

1677

0.47

0.11

 
  1. The significant SNP genotypes correlated with environmental variables for both the likelihood ratio (G) and Wald tests at the Bonferroni-corrected 0.05 alpha level are shown. The variable numbers are explained in Additional file 1: Table S1
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us