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Table 5 The list of divergent SNP loci for Apis mellifera capensis using FST outlier and environmental correlation tests

From: Population genomics and morphometric assignment of western honey bees (Apis mellifera L.) in the Republic of South Africa

No. SNP loci SNP Position Heterozygosity FST statistic Environmental correlation
1 S1_13,998,280 13,998,280 0.25 0.1 V1, V6, V10, V11
2 S1_14,309,089 14,309,089 0.13 0.32  
3 S1_19,198,024 19,198,024 0.1 0.13  
4 S1_33680990 3,787,482 0.19 0.26  
5 S1_34025116 4,131,608 0.14 0.18  
6 S1_38187276 8,293,768 0.24 0.11  
7 S1_39180700 9,287,192 0.25 0.11 V15
8 S1_47120892 1,678,017 0.47 0.16 V13, V16, V19
9 S1_50443500 5,000,625 0.39 0.2  
10 S1_52257404 6,814,529 0.46 0.21 V8, V15, V19, Longitude
11 S1_52257424 6,814,549 0.5 0.27 V15, Longitude
12 S1_58794304 116,988 0.12 0.19  
13 S1_71833698 437,948 0.5 0.2  
14 S1_72542859 1,147,109 0.2 0.13  
15 S1_84555306 13,159,556 0.22 0.17 V13, V16, V19
16 S1_84555310 13,159,560 0.21 0.13 V15, Latitude
17 S1_94849186 9,090,064 0.32 0.15  
18 S1_96460917 10,701,795 0.42 0.15  
19 S1_100472193 14,713,071 0.29 0.13  
20 S1_105727753 1,495,594 0.13 0.11  
21 S1_108033805 3,801,646 0.29 0.11  
22 S1_108684700 4,452,541 0.14 0.16 V4, V5, V7, V14, V15, V17, V18, Longitude
23 S1_108684756 4,452,597 0.15 0.16 V4, V5, V7, V14, V15, V17, V18, Longitude
24 S1_108786716 4,554,557 0.45 0.42 V9
25 S1_109332327 5,100,168 0.21 0.25 V3, V4, V5, V7,V14, V15, V17, V18, Longitude
26 S1_110951124 6,718,965 0.18 0.28 V4, V5, V7, V14, V17, V18, Longitude
27 S1_110951168 6,719,009 0.18 0.28 V4, V5, V7, V14, V17, V18, Longitude
28 S1_110951197 6,719,038 0.19 0.27 V3, V4, V5, V7, V14, V15, V17, V18, Longitude
29 S1_111171339 6,939,180 0.18 0.24 V3, V4, V5, V7, V14, V15, V17, V18, Longitude
30 S1_111171425 6,939,266 0.18 0.24 V3, V4, V5, V7, V14, V15, V17, V18, Longitude
31 S1_111285658 7,053,499 0.18 0.23 V4, V14, V15, V17, V18, Longitude
32 S1_118855642 1,404,038 0.48 0.14  
33 S1_120132551 2,680,947 0.2 0.13 Longitude
34 S1_132727867 1,729,619 0.2 0.25 V3, V9, Longitude
35 S1_132761070 1,762,822 0.5 0.38 V3, V9, Longitude
36 S1_133026966 2,028,718 0.23 0.18 Longitude
37 S1_146906109 4,787,308 0.16 0.21  
38 S1_152157525 10,038,724 0.43 0.14  
39 S1_158767923 3,683,069 0.44 0.11  
40 S1_177861915 8,050,405 0.2 0.2 V1, V5, V8, V10
41 S1_192304686 301,823 0.16 0.36 V8
42 S1_207842400 5,585,782 0.07 0.13  
43 S1_210484669 8,228,051 0.3 0.1  
44 S1_212486639 62,692 0.5 0.17 Longitude
45 S1_238491065 11,486 0.16 0.15  
46 S1_238491098 11,519 0.36 0.15 V13, V15, V16, V19
47 S1_238498932 1677 0.47 0.11  
  1. The significant SNP genotypes correlated with environmental variables for both the likelihood ratio (G) and Wald tests at the Bonferroni-corrected 0.05 alpha level are shown. The variable numbers are explained in Additional file 1: Table S1