Table 1 Summary of sequence assembly and functional annotation
Level | Item | No. of sequences | Percentage (%) |
|---|---|---|---|
Assembly | Total number of Unigenes | 87,319 | – |
Total bases (Mb) | 76,328,365 | – | |
N50 (bp) | 1406 | – | |
Average Unigene length (bp) | 874 | – | |
Annotation | NT-annotated | 54,827 | 62.79 |
NR-annotated | 58,770 | 67.30 | |
SwissProt-annotated | 40,700 | 46.61 | |
KEGG-annotated | 43,910 | 50.29 | |
COG-annotated | 22,252 | 25.48 | |
GO-annotated | 25,172 | 28.83 | |
All annotated Unigenes | 63,464 | 72.68 |