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Table 1 Computationally and experimentally validated miRNA-target databases used for mRNA and lncRNA

From: Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes

miRNA-Target Databases

mRNA

lncRNA

P/C

Reference

TargetScan

+

+

P

[56]

miRcode

+

+

P

[57]

mirSVR

+

+

P

[58]

PITA

+

+

P

[59]

RNA22

+

+

P

[60]

lnCeDB

 

+

P

[61]

mirTarBase

+

+

E

[62]

Diana LncBase

 

+

E

[63]

  1. Plus signs denote databases that are used for the miRNA interactions of the RNA type. ‘P’ denotes predicted target information while ‘E’ denotes experimentally supported target information
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BMC Genomics

ISSN: 1471-2164

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