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Table 1 Comparison of deletion events larger than 10 Kb in the AUST-02 genomes

From: Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre

Size (Kbp) PAO1 locus tags Features Genome (strain/clade; patient ID; collection year)
Gene Function Absent Present
50–93 PA2165-PA2217 exoY
hcnABC
cupA1-A5
T3SS secreted toxin
Hydrogen cyanide biosynthesis operon
Chaperone usher fimbrae operon
• AUS947 (M3L7; Patient 39; 2011)
• AUS970 (M3L1; Patient 43; 2007)
• AUS853 (M3 clade; Patient 45; 2007)
• AUS854 (M3 clade; Patient 44; 2007)
• All other AUST-02 isolates
40 PA3619-PA3620 • Adjacent to mutS Putative prophage • AUS958 (M3L7; Patent 29; 2011)
• AUS970 (M3L1; Patient 43; 2007)
• AUS853 (M3 clade; Patient 45; 2007)
• AUS854 (M3 clade; Patient 44; 2007)
• All other M3L7 isolates
• Some Perth isolatesa
• AUS24 (M2 clade; Patient 16; 2007)
14 PA1914- PA1923 • PA1914
nrdD
• PA1922
Encodes halovibrin
Pathogenesis related factor
TonB-dependent receptor
• All M3L7 isolates • All other AUST-02 isolates
12 PA2229- PA2237 pslABCDEFG Biofilm formation • All M3L7 isolates
• AUS853 (M3 clade; Patient 45; 2007)
• All other AUST-02 isolates
  1. aAUS15 (M2 clade; Patient 18; 2008); AUS874 (M2 clade; Patient 22; 2008); AUS17 (M2 clade; Patient 17; 2008); AUS876 (M2 clade; Patient 21; 2008); AUS877 (M2 clade; Patient 20; 2008)