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Table 1 Representative genomes used in comparative study

From: Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle

Strain Taxonomya Accession number Genome size (Mb) Ecological niche Reference
Pontimonas
salivibrio
CL-TW6T
Micrococcales
Microbacteriaceae
CP026923 1.76b coastal waters
planktonic
This study [1]
acMicro-4c Micrococcales
family unspecified
JNSD01000000 1.21b freshwater
planktonic
[15]
Microcella
alkaliphila
JAM AC0309
Micrococcales
Microbacteriaceae
AP017315 2.70 deep sea sedimentd [91]
Yonghaparkia
sp. Root332
Micrococcales
Microbacteriaceae
NZ_LMCX00000000 > 1.6 Plant root/ground water [92]
Clavibacter
michiganensis
nebraskensis
NCPPB 2581
Micrococcales
Microbacteriaceae
NC_020891 3.06 plant
pathogen
unpublished
See [93]
Leifsonia xyli cynodontis
DSM 46306
Micrococcales
Microbacteriaceae
NC_022438 2.68 plant
pathogen
[94]
Microbacterium
testaceum
StLB037
Micrococcineae
Microbacteriaceae
NC_015125 3.98 endophytic [95]
Rathayibacter
toxicus
70137
Micrococcales
Microbacteriaceae
NZ_CP010848 2.33 plant
pathogen
unpublished
See [96]
Rhodoluna lacicola MWH-Ta8 Micrococcales
Microbacteriaceae
CP007490 1.43b freshwater
planktonic
[97]
Mycobacterium
tuberculosis
H37Rv
Corynebacterineae
Mycobacteriaceae
NC_000962 4.41 human pathogen [14]
Corynebacterium
glutamicum
WM001
Corynebacteriales
Corynebacteriaceae
NZ_CP022394 3.31 soil, water unpublished
See [98]
Streptomyces
cattleya
DSM 46488
Actinomycetales
Streptomycineae
NC_017586
NC_017585
6.28
1.81
soil, decaying
vegetation
unpublished
See [99]
MedAcidi-G1b Acidimicrobiales JUEM00000000 1.85-2 Mediterranean sea
chlorophyll max.
[10]
Prochlorococcus marinus MD4 Cyanobacteria NC_005072 1.66b ocean, oligotrophic zone [100]
Pelagibacter ubique HTCC1062 Alpha Proteobacteria NC_007205 1.31b ocean, oligotrophic zone [8]
  1. aArranged in order of increasing phylogenetic distance
  2. bConsidered streamlined
  3. cFor metagnomic assemblies, only the assembly with the most similar genes to P. salivibrio was considered
  4. dAlthough other members of Microcella alkaliphila have been found in fresh water [101]