Skip to main content

Table 3 QTLs identified by ICIM

From: Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

QTL Chra Left marker Right marker Genetic position (cM) Physical position (bp) LODb PVE(%)c ADDd QTLs reportede
Start End Distance Start End Distance
qPH1–1 1 Marker4368622 Marker4217409 20.62 21.09 0.47 2,481,199 2,518,043 36,844 8.81 4.66 2.65 qPH-1-1 [14]
qPH5–1 5 Marker1701487 Marker1739184 0.81 1.29 0.48 3,041,062 3,116,230 75,168 6.65 9.30 5.05 qPH05–1 [26]
qPH6–1 6 Marker131534 Marker172599 76.69 77.50 0.81 17,471,671 18,171,743 700,072 12.68 7.62 5.02 plant height 17–6 [25]
qPH7–1 7 Marker5882404 Marker5762234 52.83 54.57 1.74 42,930,499 42,952,373 21,874 7.86 4.09 −3.21  
qPH8–1 8 Marker2999607 Marker2981023 63.87 65.77 1.90 13,832,458 14,205,949 373,491 19.61 37.61 8.58  
qPH8–2 8 Marker2962002 Marker2806136 174.90 175.24 0.34 45,424,861 45,433,165 8304 7.09 3.94 3.65  
qPH16–1 16 Marker3112758 Marker3182372 81.56 84.52 2.96 6,932,336 7,381,056 448,720 4.19 2.66 −3.20  
qPH17–1 17 Marker403730 Marker599785 41.57 44.66 3.08 15,333,360 15,937,896 604,536 8.28 11.88 5.78 qPH17–1 [26]
qPH19–1 19 Marker2154660 Marker1993462 33.77 35.14 1.36 38,782,154 38,837,787 55,633 17.29 11.56 6.43 plant height 6–4 [19]
qSW5–1 5 Marker1790368 Marker1713283 21.62 22.63 1.01 5,022,424 5,076,531 54,107 7.63 7.44 0.53 seed weight 25–1 [37]; seedweight 50–17 [67]
qSW5–2 5 Marker1954345 Marker1983847 100.58 101.74 1.16 37,080,533 37,099,610 19,077 3.56 3.48 −0.15  
qSW9–1 9 Marker4666534 Marker4706727 96.89 101.89 5.00 13,567,369 13,932,346 364,977 8.78 9.53 0.53 seed weight 15–6 [28]
qSW11–1 11 Marker1480158 Marker1628838 2.55 5.27 2.72 1,243,413 1,813,344 569,931 6.20 5.17 0.38  
qSW11–2 11 Marker1573686 Marker1603890 59.13 65.87 6.74 10,726,154 25,136,002 14,409,848 6.41 5.43 −0.37 seed weight 32–1 [68]
qSW12–1 12 Marker5558494 Marker5592791 18.47 23.12 4.65 3,998,395 4,965,904 967,509 17.83 22.77 −0.77  
qSW13–1 13 Marker3613921 Marker3643913 103.37 104.05 0.68 29,371,757 29,486,787 115,030 15.12 18.55 −0.70 seed weight 6–6 [27]; seed weight 15–3 [28]; seed weight 49–14 [30]; seed weight 44–2 [29]
qSW15–1 15 Marker2580154 Marker2712589 22.49 26.30 3.81 13,761,334 13,880,441 119,107 12.51 12.21 −0.46 seed weight 2–3 [31]; seed weight 34–12 [32]
qSW20–1 20 Marker809331 Marker998443 87.30 89.41 2.11 35,452,608 35,720,703 268,095 5.97 5.26 0.39 seed weight 36–5 [32]
qSW20–2 20 Marker846233 Marker994705 165.31 169.83 4.52 45,972,286 46,673,050 700,764 3.96 3.97 0.35 seed weight 50–16 [67]
qOil1–1 1 Marker4303320 Marker4156660 61.50 66.40 4.90 35,010,738 37,973,804 2,963,066 22.89 30.25 0.42  
qOil1–2 1 Marker4417270 Marker4449632 77.85 80.37 2.51 35,669,867 36,135,498 465,631 12.29 14.19 −0.24  
qOil6–1 6 Marker172599 Marker293115 77.50 78.32 0.82 18,171,372 18,533,013 361,641 7.98 5.59 −0.22 seed oil 23–1 [28]
qOil10–1 10 Marker1115605 Marker1053573 9.00 9.81 0.82 5,243,953 5,694,905 450,952 11.41 8.12 −0.23  
qOil10–2 10 Marker1281634 Marker1235885 180.85 183.08 2.23 41,520,254 41,545,664 25,410 23.61 20.17 0.37  
qOil13–1 13 Marker3440932 Marker3635368 42.22 44.89 2.67 14,747,494 16,600,118 1,852,624 6.62 4.31 −0.09 seed oil 24–4 [33]
qOil19–1 19 Marker2188637 Marker2054649 8.92 10.22 1.31 34,198,684 34,698,502 499,818 12.69 8.92 −0.24 mqseed oil-022 [34]
qOil19–2 19 Marker2061159 Marker2270561 18.20 19.09 0.88 36,014,695 36,059,931 45,236 4.58 2.91 0.11 seed oil 2–7 [35]
qProtein1–1 1 Marker4337527 Marker4303320 58.32 61.50 3.18 14,274,646 37,973,804 23,699,158 11.05 17.68 −0.37  
qProtein3–1 3 Marker6774045 Marker6819354 146.11 151.72 5.61 37,481,860 38,933,728 1,451,868 2.61 3.57 −0.14 seed protein 21–9 [25]
qProtein4–1 4 Marker6548332 Marker6730760 31.65 32.83 1.18 5,276,137 5,604,533 328,396 3.86 9.85 0.23 seed protein 19–1 [69]
qProtein5–1 5 Marker1695301 Marker1847746 74.43 77.65 3.23 32,108,882 32,889,638 780,756 2.90 4.05 −0.17  
qProtein8–1 8 Marker2934032 Marker2871125 186.80 189.12 2.32 43,600,623 43,628,816 28,193 3.19 4.56 0.18 seed protein 21–1 [25]
qProtein10–1 10 Marker1235885 Marker1249450 183.08 184.24 1.16 41,545,293 42,037,748 492,455 6.94 16.83 −0.36 seed protein 27–5 [37]; qPro10a [38]
qProtein15–1 15 Marker2482668 Marker2379482 56.98 57.12 0.13 15,668,567 15,751,338 82,771 5.51 14.36 −0.25 seed protein 4–13 [36]
qProtein16–1 16 Marker3134296 Marker3275652 122.68 125.74 3.06 31,042,213 31,372,812 330,599 4.18 6.24 0.23  
  1. achr, chromosome; b LOD, logarithm of odds; c PVE, phenotypic variance explained; d ADD, additive effect; e QTL names based on soybase.org and previous reports