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Table 5 Annotations of candidate genes

From: Construction of a high-density genetic map and mapping of QTLs for soybean (Glycine max) agronomic and seed quality traits by specific length amplified fragment sequencing

QTL

Gene

Start

Stop

Annotation

qPH5–1

Glyma.05 g035000

3,078,012

3,084,940

Xanthine/uracil permease family protein

qPH8–1

Glyma.08 g173700

13,838,458

13,841,300

Photosystem II subunit R

Glyma.08 g174000

13,887,781

13,892,150

cAMP-regulated phosphoprotein 19-related protein

Glyma.08 g175200

13,981,187

13,982,765

Glutathione S-transferase TAU 19

Glyma.08 g175800

14,037,039

14,042,017

Aldolase-type TIM barrel family protein

Glyma.08 g175900

14,046,314

14,050,528

TCP-1/cpn60 chaperonin family protein

Glyma.08 g177100

14,195,428

14,196,376

 

Glyma.08 g177200

14,199,862

14,201,145

Arabinogalactan protein 1

qPH8–2

Glyma.08 g337400

45,423,999

45,433,706

Transducin/WD40 repeat-like superfamily protein

qPH17–1

Glyma.17 g167700

15,479,880

15,481,925

CYCLIN D3;2

Glyma.17 g169100

15,650,607

15,655,215

2OG-Fe(II) oxygenase superfamily protein

Glyma.17 g169200

15,679,753

15,681,009

Protein of unknown function (DUF579)

Glyma.17 g169700

15,823,866

15,827,109

Sumo conjugation enzyme 1

qSW5–1

Glyma.05 g055700

5,050,728

5,055,325

Beta vacuolar processing enzyme

qSW12–1

Glyma.12 g055200

3,998,947

3,999,707

Histone superfamily protein

Glyma.12 g056700

4,123,137

4,123,683

 

Glyma.12 g058200

4,235,968

4,237,273

HSP20-like chaperones superfamily protein

Glyma.12 g058500

4,254,166

4,256,321

Adenine nucleotide alpha hydrolases-like superfamily protein

Glyma.12 g064000

4,707,197

4,709,987

Heat shock protein 70

Glyma.12 g064300

4,739,216

4,740,496

Pathogenesis-related thaumatin superfamily protein

Glyma.12 g064500

4,752,366

4,753,273

Dessication-induced 1VOC superfamily protein

Glyma.12 g065100

4,793,422

4,794,276

Histone superfamily protein

Glyma.12 g065200

4,801,083

4,802,209

Histone superfamily protein

Glyma.12 g065400

4,806,242

4,807,054

Histone superfamily protein

Glyma.12 g065600

4,818,489

4,822,602

Ras-related small GTP-binding family protein

Glyma.12 g066700

4,824,810

4,828,762

Ribosomal protein L23AB

qSW13–1

Glyma.13 g180400

29,380,779

29,383,908

Thioredoxin family protein

qOil1–2

Glyma.01 g105600

35,687,686

35,690,416

 

Glyma.01 g106000

35,856,497

35,858,671

Glutathione S-transferase TAU 8

Glyma.01 g106100

35,881,007

35,883,036

Glutathione S-transferase TAU 8

Glyma.01 g106200

35,918,034

35,919,778

Adenine nucleotide alpha hydrolases-like superfamily protein

Glyma.01 g106500

36,103,010

36,105,425

 

qOil10–2

Glyma.10 g181800

41,516,211

41,528,077

Calcium-binding EF-hand family protein

Glyma.10 g181900

41,531,674

41,535,236

Trigalactosyldiacylglycerol 1

qProtein8–1

Glyma.08 g316200

43,611,374

43,617,841

Endoribonuclease L-PSP family protein

qProtein10–1

Glyma.10 g182500

41,577,972

41,579,422

Ribosomal protein L14

Glyma.10 g183800

41,699,751

41,702,224

Differentiation and greening-like 1

Glyma.10 g183900

41,719,265

41,728,269

Peptide transporter 3

Glyma.10 g184900

41,781,111

41,786,726

Ureidoglycolate amidohydrolase

Glyma.10 g186000

41,910,760

41,912,094

Phosphoenolpyruvate carboxylase kinase 1

Glyma.10 g186300

41,926,187

41,928,530

Small nuclear ribonucleoprotein family protein

Glyma.10 g187200

42,035,252

42,037,969

P-loop containing nucleoside triphosphate hydrolases superfamily protein

qProtein15–1

Glyma.15 g171800

15,667,788

15,671,786

Eukaryotic translation initiation factor 4A1

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BMC Genomics

ISSN: 1471-2164

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