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Table 2 Analysis of the biological processes associated with the DEGs using the PANTHER tool

From: Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Biological Processes

IR4.5 vs. SH4.5

IR24 vs. SH24

IR24 vs. IR4.5

SH24 vs. SH4.5

cellular process (GO:0009987)

189

675

920

245

metabolic process (GO:0008152)

136

450

661

168

biological regulation (GO:0065007)

73

257

326

93

response to stimulus (GO:0050896)

72

226

275

73

localization (GO:0051179)

37

154

192

49

cellular component organization or biogenesis (GO:0071840)

34

151

205

50

developmental process (GO:0032502)

32

139

164

45

multicellular organismal process (GO:0032501)

19

122

167

37

immune system process (GO:0002376)

21

59

51

14

biological adhesion (GO:0022610)

15

44

40

10

locomotion (GO:0040011)

15

37

43

9

reproduction (GO:0000003)

1

10

12

5

rhythmic process (GO:0048511)

2

1

3

3

  1. Associative analysis for all comparison groups was carried out according to the Gene Ontology (GO) database