Table 1 Alignment of contigs from different data sets to the AGPv2 reference genome using BLAST. To be classified as aligned, contigs must match the reference with ≥95% identity
From: Linked read technology for assembling large complex and polyploid genomes
No. Alignments | No. Contigs (%) from | ||||||
|---|---|---|---|---|---|---|---|
LR Contigs | Trimmed LR Contigs | MAGIs | Sim 1a | Sim 2b | Sim 3c | ABySS | |
1 (Unique) | 222,531 (95.0) | 222,245 (95.1) | 109,665 (96.1) | 256,255 (98.7) | 262,727 (98.8) | 257,049 (98.7) | 4,614,334 (42.9) |
2 | 2145 (0.9) | 2194 (0.9) | 1347 (1.2) | 1985 (0.8) | 2014 (0.8) | 1971 (0.8) | 1,520,610 (14.1) |
> 2 | 629 (0.3) | 535 (0.2) | 138 (0.1) | 568 (0.2) | 488 (0.2) | 716 (0.3) | 4,268,325 (39.7) |
0 | 8848 (3.8) | 8931 (3.8) | 3024 (2.6) | 762 (0.3) | 719 (0.3) | 790 (0.3) | 350,313 (3.26) |
Total | 234,153 | 233,905 | 114,173 | 259,570 | 265,968 | 260,526 | 10,753,582 |